PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01492.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 404aa    MW: 45114.9 Da    PI: 6.6572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01492.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-1280102426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              e C+f+ rtG CkyG++CkF+H+
  Rsa1.0_01492.1_g00001.1  80 EDCSFYIRTGSCKYGSSCKFNHP 102
                              89********************9 PP
2zf-CCCH308.9e-10130150525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C++++rtG CkyG++C+F+H
  Rsa1.0_01492.1_g00001.1 130 ECKYYFRTGGCKYGETCRFSH 150
                              6******************** PP
3zf-CCCH37.73.5e-12173197226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C+f++r+G Ck+G+ CkF+H+
  Rsa1.0_01492.1_g00001.1 173 GEKECPFYMRNGSCKFGGDCKFNHP 197
                              7899********************9 PP
4zf-CCCH25.22.8e-08305330227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++ +tG Ck+ ++Ck++H++
  Rsa1.0_01492.1_g00001.1 305 DQPECSYYVKTGDCKFKSKCKYHHPK 330
                              689*********************96 PP
5zf-CCCH339.9e-11351375226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              +++ C +++r+G+Ck+G+ C+F H+
  Rsa1.0_01492.1_g00001.1 351 DQSMCTHYSRYGICKFGPACRFDHS 375
                              5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-674104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.12276104IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-576103IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-980102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-582101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549125153IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4125152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6127154IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7130150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5131152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601171199IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6171198IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10173197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4177196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751303331IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092303330IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5307333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906349377IPR000571Zinc finger, CCCH-type
SMARTSM003560.019349376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6350377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5353375IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSKPDPDPKQ PSGSSSEKDP VAADHITEQE LSEDLRNVVL LDEATEELNV PISVSDGDQQ  60
EEEEGREKRM MVYPVRPDAE DCSFYIRTGS CKYGSSCKFN HPLRRNPQIG REKVRERERD  120
EDVENPRLME CKYYFRTGGC KYGETCRFSH TKQQTSLPSR PELNFLGLPI RPGEKECPFY  180
MRNGSCKFGG DCKFNHPDPK AVGGGVDSPL FRGNNGAPKD APQASSTSWS SSRHMNGTGT  240
GGTAPFIPLM YSQNRGVSPH TPEWSGYQAP SAYPPERSVL PPSTYSAETS SFSQLPAEEF  300
PERPDQPECS YYVKTGDCKF KSKCKYHHPK NRLPKQSPSS FNDKGLPLRP DQSMCTHYSR  360
YGICKFGPAC RFDHSIPPTF SSSSSQTVDT PQLGGNANEN DSWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01492.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287901e-107AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
GenBankBT0202231e-107BT020223.1 Arabidopsis thaliana At5g63260 mRNA, complete cds.
GenBankBT0204431e-107BT020443.1 Arabidopsis thaliana At5g63260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432864.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLM4FC030.0M4FC03_BRARP; Uncharacterized protein
STRINGBra038619.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein