PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01508.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23310.4 Da    PI: 8.6116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01508.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1869124156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rrk+ ++tkeq + Lee F +n+++  +++ eLA+ l+L++rqV vWFqNrRa+ k
  Rsa1.0_01508.1_g00002.1  69 RRKKLRLTKEQSHLLEESFIQNHTLASKQKLELATFLKLSQRQVEVWFQNRRARSK 124
                              79999*************************************************98 PP
2HD-ZIP_I/II108.64.5e-3570158190
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq++lLEesF ++++L +++K ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+ L+kevee
  Rsa1.0_01508.1_g00002.1  70 RKKLRLTKEQSHLLEESFIQNHTLASKQKLELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRCFGSLKEQNRLLQKEVEE 155
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lree 90 
                              Lr +
  Rsa1.0_01508.1_g00002.1 156 LR-A 158
                              *9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1954125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-1857124IPR009057Homeodomain-like
PROSITE profilePS5007117.49166126IPR001356Homeobox domain
SMARTSM003891.3E-1668130IPR001356Homeobox domain
PfamPF000468.2E-1669124IPR001356Homeobox domain
CDDcd000867.21E-1569127No hitNo description
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003406.7E-16126169IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-8126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MALSPNSSSL ELSISLPSFS QLSSHPSSGE YMVRNLDINQ TPKTEDRDWI MIDATPHANE  60
EDSNSCGRRR KKLRLTKEQS HLLEESFIQN HTLASKQKLE LATFLKLSQR QVEVWFQNRR  120
ARSKLKHTEM ECEYLKRCFG SLKEQNRLLQ KEVEELRALK PVPASVLTMC PRCERATDAT  180
DNAVNDGTAP RSQSRVTVSS SSSLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674GRRRKKLRL
26773RRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00226DAPTransfer from AT1G70920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01508.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458039.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM71e-91ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A398ABK71e-118A0A398ABK7_BRACM; Uncharacterized protein
TrEMBLM4CUQ71e-118M4CUQ7_BRARP; Uncharacterized protein
STRINGBra007952.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-88homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]