PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01566.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 676aa    MW: 76475.2 Da    PI: 9.8041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01566.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.8e-19580614135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs C+ttkTp+WR gp+g+k+LCnaCG+++rk+++
  Rsa1.0_01566.1_g00006.1 580 CSECKTTKTPMWRGGPSGPKSLCNACGIRFRKQRR 614
                              ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078872.8E-9186365IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF577161.71E-12573614No hitNo description
PROSITE profilePS5011412.215574610IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-18574630IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-15578614IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.1E-17580614IPR000679Zinc finger, GATA-type
CDDcd002026.13E-12580614No hitNo description
PROSITE patternPS003440580605IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009620Biological Processresponse to fungus
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010112Biological Processregulation of systemic acquired resistance
GO:0010224Biological Processresponse to UV-B
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0071456Biological Processcellular response to hypoxia
GO:0080142Biological Processregulation of salicylic acid biosynthetic process
GO:1902584Biological Processpositive regulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MKMRDRLFHG GSGYSGLKAH KLTFKTAVKK VMRHMSNNQI MVHMENMFRK IVREELERHI  60
QQHHLSSSWS QIERPRSETP SSRTQFKLRF INSPPPSIFT GAKIEAKNGS PLAIELVDAA  120
TNARVVSGPL SSSRVDLVPL NADFTDESWT VDLFKRYILK PRDGKRPLLA GDVTLTLKNG  180
VGVVAVAFTD NSIWSRCRKF RLGARLTGDG AVEARSEAFK CKDQRGESYK KHHPPYPGDE  240
VWRLEKIAKD GASALRLAER DVYTVKDFRR FYAKDPSALY NILAVGGGIS KKIWESIVTH  300
AMCCVLDETE CYIYDAIAHD VSLVFNSVYE VTKVFICGVL GHVDQLPSYQ LDQLKREAYQ  360
NVSRFRDGRT FADDPQRSLQ CPQNLGFGPG FQQHMDFQGP SDSSMHAYFT GSCSTSQPET  420
LMSFENSPAK TFHIDPTFIP TFRNNFRASE HDMIHDELQS LVSRGYNKNN EDESGFAYHH  480
HHDNWSPGAA VWEQQEYDNL CVSVSGTEKA GMYDVRIANI GGSPRARWCK VKAAFKLRQV  540
WRHANARKRG KAYKWYSSWL GYCGIKKGAP KTKMEEEKCC SECKTTKTPM WRGGPSGPKS  600
LCNACGIRFR KQRRSELLGI RIIHTHKDYK KIKSSTSSPS LPLSNGGVST KKRRILKEEE  660
QAALCLLLLS CNSVFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1545551ARKRGKA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA in a sequence-specific manner, 5'-GAAATTTTGG-3', to promote the expression of target genes (PubMed:20921422, PubMed:21615571, PubMed:23153277). Recruited to the promoter of ICS1 and other defense-related genes (e.g. PR1, PR2 and EDS5) in response to both biotic (e.g. Pseudomonas syringae pv. maculicola ES4326, P. syringae pv. tomato DC3000, and microbe-associated molecular patterns (MAMPs) such as flg22) and abiotic stresses (e.g. UV-B, drought and abscisic acid), thus triggering rapid defense responses by stimulating salicylic acid (SA) biosynthesis. Involved in basal and systemic acquired resistance to P. syringae and Hyaloperonospora arabidopsidis (PubMed:20921422, PubMed:21615571, PubMed:22466450, PubMed:19214217). Mediates resistance to drought and sensitivity to abscisic acid (ABA), especially for ABA-mediated signaling process that regulates early seedling growth (PubMed:22466450). {ECO:0000269|PubMed:19214217, ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:21615571, ECO:0000269|PubMed:22466450, ECO:0000269|PubMed:23153277}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01566.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced rapidly by pathogenic bacteria Pseudomonas syringae pv. maculicola ES4326 and P. syringae pv. tomato DC3000, by the root-colonizing endophytic plant growth-promoting fungus Piriformospora indica, and by microbe-associated molecular patterns (MAMPs) such as flg22 and hrcC in both local and systemic leaves in both local and systemic leaves (PubMed:20921422, PubMed:19214217, PubMed:23153277, PubMed:23118477). Accumulates transiently in response to 12-oxo-phytodienoic acid (OPDA) (PubMed:16258017). {ECO:0000269|PubMed:16258017, ECO:0000269|PubMed:19214217, ECO:0000269|PubMed:20921422, ECO:0000269|PubMed:23118477, ECO:0000269|PubMed:23153277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085282e-33AB608528.1 Raphanus sativus DNA, microsatellite locus RsSH124, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484286.10.0PREDICTED: calmodulin-binding protein 60 G-like
SwissprotF4K2R60.0CB60G_ARATH; Calmodulin-binding protein 60 G
TrEMBLA0A397Z6050.0A0A397Z605_BRACM; Uncharacterized protein
STRINGBra009925.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM866022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-20GATA transcription factor 23
Publications ? help Back to Top
  1. Wang L, et al.
    Arabidopsis CaM binding protein CBP60g contributes to MAMP-induced SA accumulation and is involved in disease resistance against Pseudomonas syringae.
    PLoS Pathog., 2009. 5(2): p. e1000301
    [PMID:19214217]
  2. Zhang Y, et al.
    Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(42): p. 18220-5
    [PMID:20921422]
  3. Wang L, et al.
    CBP60g and SARD1 play partially redundant critical roles in salicylic acid signaling.
    Plant J., 2011. 67(6): p. 1029-41
    [PMID:21615571]
  4. Weston DJ, et al.
    Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.
    Mol. Plant Microbe Interact., 2012. 25(6): p. 765-78
    [PMID:22375709]
  5. Wan D, et al.
    Calmodulin-binding protein CBP60g is a positive regulator of both disease resistance and drought tolerance in Arabidopsis.
    Plant Cell Rep., 2012. 31(7): p. 1269-81
    [PMID:22466450]
  6. Venus Y,Oelmüller R
    Arabidopsis ROP1 and ROP6 influence germination time, root morphology, the formation of F-actin bundles, and symbiotic fungal interactions.
    Mol Plant, 2013. 6(3): p. 872-86
    [PMID:23118477]
  7. Truman W, et al.
    The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity.
    Plant Physiol., 2013. 163(4): p. 1741-51
    [PMID:24134885]
  8. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  9. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  10. Sun T, et al.
    ChIP-seq reveals broad roles of SARD1 and CBP60g in regulating plant immunity.
    Nat Commun, 2015. 6: p. 10159
    [PMID:27206545]
  11. Kong Q, et al.
    Two Redundant Receptor-Like Cytoplasmic Kinases Function Downstream of Pattern Recognition Receptors to Regulate Activation of SA Biosynthesis.
    Plant Physiol., 2016. 171(2): p. 1344-54
    [PMID:27208222]
  12. Zou B, et al.
    Calmodulin-binding protein CBP60g functions as a negative regulator in Arabidopsis anthocyanin accumulation.
    PLoS ONE, 2017. 12(3): p. e0173129
    [PMID:28253311]
  13. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]
  14. Qin J, et al.
    The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity.
    Elife, 2019.
    [PMID:29757140]