PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01576.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 342aa    MW: 38714 Da    PI: 6.9512
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01576.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19.1e-36842192125
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesss 79 
                              ++kkdrhskihT++g+RdRRvRls+ +a++fFdLqd LGf k+s+t++WLl+++ +ai el++ +  ++++         e     
  Rsa1.0_01576.1_g00002.1  84 TVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDVLGFGKASETLDWLLKKSRRAINELVQEKKLNNKDGdfgnnrggE----- 164
                              79**************************************************************44444222222211111..... PP

                      TCP  80 ssasnsssg............kaaksaa.kskksqksaasalnlakesrakarararer 125
                              ++++    +            +++++   + kk++ks+ s   l ++sr k+++  re 
  Rsa1.0_01576.1_g00002.1 165 EEDE----DdgaksfvygsspDSCQEVVcEVKKTEKSNISSKGLREKSRGKSKQITREM 219
                              1111....012223455454466666664444444444444555555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3485220IPR005333Transcription factor, TCP
PROSITE profilePS5136932.66186144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG TIRNPYNHQS TASPGQMVSA VPESLIDYMS  60
FNSNSAVNQQ GFEIPEVSRE IKKTVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDV  120
LGFGKASETL DWLLKKSRRA INELVQEKKL NNKDGDFGNN RGGEEEDEDD GAKSFVYGSS  180
PDSCQEVVCE VKKTEKSNIS SKGLREKSRG KSKQITREMT YDHPETVSKI TQTEMMDPFK  240
RSVIFNEGHS LYKEAIQEFD NQECILTKTK VNLPTDMDRS YNQHHGTFML KDQGSSSNYD  300
TILPQNLDYG FDQNPFMDQT FCAVTNRNFP RGKVWIQDSS LA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01576.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469499.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-155TCP1_ARATH; Transcription factor TCP1
TrEMBLM4EYW80.0M4EYW8_BRARP; Uncharacterized protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-148TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]