PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01591.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 177aa    MW: 20016.7 Da    PI: 6.5143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01591.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-1378123247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++WT+eE+  ++++ +++G g+Wk I+r++  +Rt  q+ s+ qk+
  Rsa1.0_01591.1_g00007.1  78 LPWTAEEHGNFLKGLAMFGRGDWKNISRKLVMTRTSTQVASHAQKH 123
                              69*****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-871124IPR009057Homeodomain-like
PROSITE profilePS5129417.53372128IPR017930Myb domain
SuperFamilySSF466894.49E-1574128IPR009057Homeodomain-like
SMARTSM007172.9E-876126IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.9E-1477127IPR006447Myb domain, plants
CDDcd001674.36E-979124No hitNo description
PfamPF002492.5E-1079123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MFELALVITE NDPNMFETIA TLLGMPLEVV KHYYAALVHD VELIESGRYG TIDYQDYADG  60
LPSSETKHIE KDKKQRGLPW TAEEHGNFLK GLAMFGRGDW KNISRKLVMT RTSTQVASHA  120
QKHFLRQKME NQAKKRSSIH DITLVVDNDA ANDVTAPRSD LEATMGQVHS GQQMPQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01591.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488909.11e-121PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A0D3CLD96e-82A0A0D3CLD9_BRAOL; Uncharacterized protein
STRINGBo5g137250.11e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.12e-52MYB_related family protein