PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01592.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 310aa    MW: 34335.8 Da    PI: 5.7142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01592.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18212246135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C t  Tp+WR gp g+ktLCnaCG++y++++l
  Rsa1.0_01592.1_g00002.1 212 CVHCATDRTPQWRTGPMGPKTLCNACGVRYKSRRL 246
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-742296IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.24E-14205267No hitNo description
SMARTSM004011.0E-16206260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.2E-15207245IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.53210242IPR000679Zinc finger, GATA-type
CDDcd002022.56E-15211258No hitNo description
PfamPF003207.0E-16212246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEEPHEFLH TDHFAVDDLL VDFSNDDDEE NDVIADSDGA NTTTAVADSS SSSSFSTAGL  60
HSFHGDVQDG TSFSGGLCVP SDELAELEWL SNFVEDSFST EHVQKLNLIS GNRTRPDSKS  120
DSSPVFTTDV SVPAKARSKR SRAAACHWAS RALPEEAFYD NPFTGQTTIS SLYLSPPSSP  180
TPTAQLWKKL AVDASCRKKD SSPESGGVER RCVHCATDRT PQWRTGPMGP KTLCNACGVR  240
YKSRRLVQEY RPVASPTFVL TKHSNSHQRV MELRRQNMTK SRHEFIHHRY GKDTAMILDV  300
SSDGDDYLIQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01592.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456159.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-142GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A397XR531e-174A0A397XR53_BRACM; GATA transcription factor
STRINGBra036555.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-111GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]