PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01632.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 188aa MW: 21304.5 Da PI: 6.0176

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01632.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.4	7.7e-25	33	107	56	127
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 wyfFs r ++y++ ++++r+t sgyWk tgk+ +v+++ +++ +g kktLvf +g++p+ge+t+W+mhey+ Rsa1.0_01632.1_g00016.1 33 LAWYFFSDRGSRYRNTNKQSRTTPSGYWKITGKTAQVKERssgSHHSIGFKKTLVFLTGKSPHGERTNWIMHEYS 107 489*********************************998777777*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.572	1	126	IPR003441	NAC domain
Pfam	PF02365	7.1E-14	20	107	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-28	32	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSLDCVLYLT YLGLCKMLEP NRECFNRGGN WDLAWYFFSD RGSRYRNTNK QSRTTPSGYW 60 KITGKTAQVK ERSSGSHHSI GFKKTLVFLT GKSPHGERTN WIMHEYSNLS SPEEITSHVV 120 CKVEYTGPAD SLQIAGESTS ERTAESLQIA GESTSERPAK SLQIANEDGY SDSYWEGNTN 180 EDWDTYLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-16	20	123	66	165	NAC domain-containing protein 19
3swm_B	1e-16	20	123	66	165	NAC domain-containing protein 19
3swm_C	1e-16	20	123	66	165	NAC domain-containing protein 19
3swm_D	1e-16	20	123	66	165	NAC domain-containing protein 19
3swp_A	1e-16	20	123	66	165	NAC domain-containing protein 19
3swp_B	1e-16	20	123	66	165	NAC domain-containing protein 19
3swp_C	1e-16	20	123	66	165	NAC domain-containing protein 19
3swp_D	1e-16	20	123	66	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01632.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466716.1	1e-113	PREDICTED: NAC domain-containing protein 68-like
TrEMBL	D7MTJ9	1e-31	D7MTJ9_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_8001417	2e-32	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28939	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01540.2	1e-23	NAC with transmembrane motif1