PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01643.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 222aa    MW: 24441.1 Da    PI: 5.7533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01643.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20111161256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+W+A Irdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Rsa1.0_01643.1_g00004.1 111 RYRGVRQRP-WGKWAAGIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 161
                              7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-22111169IPR016177DNA-binding domain
PROSITE profilePS5103224.368111168IPR001471AP2/ERF domain
SMARTSM003806.4E-35111174IPR001471AP2/ERF domain
CDDcd000182.11E-19111170No hitNo description
PfamPF008471.4E-13111160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31111169IPR001471AP2/ERF domain
PRINTSPR003674.1E-12112123IPR001471AP2/ERF domain
PRINTSPR003674.1E-12134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MANQGGQDEF RADYPEGTKP AIDDVYSFED DPVVGRFNRF GTEMSAMVSA LTQVVSARSL  60
TSSTVDTHSS SSSAGLKRER LGIDRVDSSP GPIEECTNNG LPEEAKEKKR RYRGVRQRPW  120
GKWAAGIRDP HKAARVWLGT FDTAEAAARA YDEAALRFRG NKAKLNFTED VKILPPRPHL  180
IPQADEGNEV RNDTLEHSPM EQPLLPLDSA PNSSDFRGPS SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21108167262ATERF1
3gcc_A6e-21108167262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01643.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460331.11e-164PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
SwissprotQ70II34e-49EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F54e-70A0A178U7F5_ARATH; Uncharacterized protein
STRINGAT5G50080.12e-47(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-41ethylene response factor 110