PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01663.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 571aa    MW: 64656.9 Da    PI: 7.1351
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01663.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.26.3e-30115200187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+ql
  Rsa1.0_01663.1_g00001.1 115 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 198
                              8*************************************999*****************************98..55667******* PP

                 trihelix  86 ea 87 
                              ea
  Rsa1.0_01663.1_g00001.1 199 EA 200
                              85 PP
2trihelix55.31.7e-17406488179
                 trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79 
                              +W +qe+ +L+e+r++m++++++   +++++ lW+evs+k+++ gf ++s+  Ck kwe +++ ++k+k++  k+++e s +c
  Rsa1.0_01663.1_g00001.1 406 CWNEQEIIKLMEIRTSMDSAFQEilgECSDEFLWKEVSAKLMQLGFdHKSALLCKGKWECISNGMRKEKKQITKKRKEISLSC 488
                              7*********************977679******************889**********************999888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98114173IPR017877Myb-like domain
CDDcd122031.58E-19115180No hitNo description
PfamPF138371.9E-20115201No hitNo description
PfamPF138376.2E-11405488No hitNo description
CDDcd122031.02E-13405474No hitNo description
PROSITE profilePS500905.331407467IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDEHHTQYGI PELRQLMKGG VRTTTTASPS TSSHFPSDFF GFNLAPAALP QNHRLHQFTT  60
DQEMGFLPHG IHGLGGGSST AGNNSNLNMS TSGGGVGFSG FLDGGGHGGS GGTGRWPRQE  120
TLTLLEIRSR LDHKFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE NLYKYYKKTK  180
EGKAGRQDGK HYRFFRQLEA LYGDSNNLVS FPNHNTQFMS SALHSFHTQN AMNISTTTSN  240
IHDVDSVHGF LHHQSLSISN NYNSSELELV TSSSEGNDSN SRRKKRSWKA KIKEFIDVNM  300
KRLIERQDIW LEKLTKVIED KEDQRMMKEE EWRKSEAARI DKEHLFWAKE RERMEARDVA  360
VIEALQYLTG KTLTKPLCSS PEERINGNNE IQNNSENVSV EGSGSCWNEQ EIIKLMEIRT  420
SMDSAFQEIL GECSDEFLWK EVSAKLMQLG FDHKSALLCK GKWECISNGM RKEKKQITKK  480
RKEISLSCGV YYPRNEENEI YNNQESGYDD NDQHHRMNGQ GNVGSSTSNA AAGDLRGGMA  540
ASTNCFPFVM GDGDQNLWES YSLRLSKGEH Q
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01663.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473305.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A397ZYF70.0A0A397ZYF7_BRACM; Uncharacterized protein
STRINGBra005777.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]