PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01663.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 175aa    MW: 20237 Da    PI: 9.8922
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01663.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-183588356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             k+ ++t+ ql  Le+ F+ + +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Rsa1.0_01663.1_g00005.1 35 KKKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 88
                             45679************************************************9 PP
2HD-ZIP_I/II116.21.9e-3735125292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+rl++ q+++LE+sF+ e kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++L
  Rsa1.0_01663.1_g00005.1  35 KKKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKL 120
                              9*****************999***************************************************************** PP

              HD-ZIP_I/II  88 reelk 92 
                              r+ l+
  Rsa1.0_01663.1_g00005.1 121 RSILR 125
                              *8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-182392IPR009057Homeodomain-like
PROSITE profilePS5007116.6983090IPR001356Homeobox domain
SMARTSM003896.8E-163494IPR001356Homeobox domain
CDDcd000868.56E-143591No hitNo description
PfamPF000463.9E-163588IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-193797IPR009057Homeodomain-like
PRINTSPR000313.7E-56170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000313.7E-57086IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHGDTQTGPV ISVPESEKII NNEYRLPSNN KEITKKKRLT SGQLASLERS FQDEIKLDSD  60
RKLKLSRELG LQPRQIAVWF QNRRARWKAK QLEQLYDSLR QEYDVVSREK QMLHEEVKKL  120
RSILRDQGLI KKQISGVTSG EDTTEIASVV TTKVYGPDQY NNQMVVASSC WTPYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01663.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325221e-147AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475508.11e-126PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR06e-93ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A078FE971e-111A0A078FE97_BRANA; BnaA03g01050D protein
STRINGBo3g002560.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-95homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]