PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01695.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 436aa    MW: 50133.8 Da    PI: 7.7831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01695.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-371523132133
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                      
  Rsa1.0_01695.1_g00006.1 152 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfnhggfssgddsqtrpal 237
                              5799************************************************************9999999988887777666655 PP

                      TCP  66 .ssssasec....eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrek 129
                               s++++s+     +                               + ++   k+k s +++    +++k+ rakar+ra++rt ek
  Rsa1.0_01695.1_g00006.1 238 gSAETSSDLcelaS-------------MwtvedrgsntsmtenkvDGRTMRGKRKMS-QRTPILKEMSKDARAKARERAKDRTMEK 309
                              53333333323332.............022222222244455443333333333333.33334678888***************** PP

                      TCP 130 mrik 133
                               +++
  Rsa1.0_01695.1_g00006.1 310 IMKR 313
                              8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-40153312IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724154212IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.467292309IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MNNNKTFSTT STINEDYMSF PYSDNYCSQP LLPFSPSSSI NDLLIHSNSN TENNHLDHHH  60
HRFLQAPSPF SQFEFVQDFP HLPSFLPQNI GHNDNQPITT NDHHHHPSLL PLNNTIGESQ  120
LIEPSESITT HNEDSQRIST SQDPKMKKVK KPSRTDRHSK IKTAKGTRDR RMRLSLDVAK  180
ELFGLQDMLG FDKASKTVEW LLTQAKPEII KIANSLSNQF NHGGFSSGDD SQTRPALGSA  240
ETSSDLCELA SMWTVEDRGS NTSMTENKVD GRTMRGKRKM SQRTPILKEM SKDARAKARE  300
RAKDRTMEKI MKRRPQVNSV EEVEAHNQRD EVVKKNNNTD VNWTNSFEAM PCREDTEELC  360
KNNRFSVYND FVVNKKDHIS DESYNMISKL NSSFPVLTHH RSQGVATFME QQQQQVRDVY  420
HFLGKPRDFM YCDNIR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01695.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439441.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP18-like
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A398ARF00.0A0A398ARF0_BRACM; Uncharacterized protein
STRINGBo1g117490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-170TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]