PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01707.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 476aa    MW: 54316.4 Da    PI: 4.4552
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01707.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3440.61.4e-134363741354
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn..........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgi 76 
                              ++lk+rmwkd++l+++lk+++k++    +++ ++ +s+          ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi
  Rsa1.0_01707.1_g00004.1  36 DDLKRRMWKDRNLMCKLKQQQKDNSYPSSPT-STPSSSssfssssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKARGFVYGI 120
                              79*********************99888884.4444445799999***************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-T CS
                     EIN3  77 ipekgkpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppq 159
                              +pekgkpv+g+sdsLr+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppq
  Rsa1.0_01707.1_g00004.1 121 VPEKGKPVTGSSDSLRRWWKENVQFDQTAPTAVSDYltlAAAQLISSSESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQ 203
                              **************************************9999***9977766...9****************************** PP

                              TS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHH CS
                     EIN3 160 rrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesf 244
                              rrfplekg++pPWWP+Gke wwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++
  Rsa1.0_01707.1_g00004.1 204 RRFPLEKGLAPPWWPNGKEMWWGEQGaTAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETD 289
                              **************************9999******************************************************** PP

                              HHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......X CS
                     EIN3 245 allsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcq 330
                              ++++vlnqee+++              +++++s++++e+ve++ +++          ++ ++ +krk +++e++++ s+  ++tcq
  Rsa1.0_01707.1_g00004.1 290 TWSRVLNQEEALL--------------KRLKISDDDDEEVEVEVDEE---------DQEPAMGNKRKGEFVEEEAALSN--VYTCQ 350
                              **********966..............68999999999999665555.........2356899*************999..7**** PP

                              XXXXXX.XXXXXXXXXXXXXXXXX CS
                     EIN3 331 ssqfrgsetelifadknsisqney 354
                              + ++++s+ +l+f dkn ++ +e+
  Rsa1.0_01707.1_g00004.1 351 NTSCPSSDASLGFVDKNLRTGHEM 374
                              ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.0E-12436299No hitNo description
Gene3DG3DSA:1.10.3180.104.7E-68175306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.83E-58177302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDDDCEE DEDDELDRLG EDISYDDLKR RMWKDRNLMC KLKQQQKDNS  60
YPSSPTSTPS SSSSFSSSSA IVRRAEASRR KKMARSQDSV LKYMMKIMEV CKARGFVYGI  120
VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP TAVSDYLTLA AAQLISSSES LDPNSYIHML  180
HELQDTTLGS LLSALMQHCV PPQRRFPLEK GLAPPWWPNG KEMWWGEQGA TAFEHGPPPY  240
RKPHDLRKAW KVSVLAAVIK HMSPNLERVR RLARQSKCLQ DKMMAKETDT WSRVLNQEEA  300
LLKRLKISDD DDEEVEVEVD EEDQEPAMGN KRKGEFVEEE AALSNVYTCQ NTSCPSSDAS  360
LGFVDKNLRT GHEMECLYGT QEPIYQGSVS SDGFVRSITT TSDDDDNGND TTVYQNQDGN  420
WLDYLWFERL HDFNCPAVDL NQLPDHSVSN PTVNNEEDFS LWDMGCEDRD IYMSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-591753051130Protein ETHYLENE INSENSITIVE 3
4zds_B5e-591753051130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01707.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488886.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A3P6AMF70.0A0A3P6AMF7_BRAOL; Uncharacterized protein
STRINGBo3g100500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]