PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01707.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 359aa    MW: 40606.7 Da    PI: 5.4676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01707.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-05240283955
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              Er R +ri + +  L +llP+     ++  s   iL + v+++k Lq
  Rsa1.0_01707.1_g00006.1 240 ERDRKQRIDDNIKALAKLLPHE---VKEDSSSEVILNEIVDHVKLLQ 283
                              9********************9...788899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.797231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-7231291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-6235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00178240285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSQTSPMNFN TVYQSLTALF PQIDARILRT VAREHPTNAD EAAAAVTSEV VPLFPQEWED  60
HVKKRKLLDL PLCKVEPEMQ HDDALSQWLH PSQLPQSYLA LLNEEEEEEE EATPVVKPSL  120
DYAVKKVVLP SRDAAATGAR GEVRTIYSAS NGTASSVVKP SIRVQSYTDN EELSGSSSKD  180
PVAGRSSRKE VVPPWSNYSE KLRSWKKRSN NRDFSQLHGQ CKYEPSWQSN QSKCRSYYTE  240
RDRKQRIDDN IKALAKLLPH EVKEDSSSEV ILNEIVDHVK LLQLQMKELS LNRLGGEPIS  300
HPMTFIEGFG HYIHHEEMMT KPLEEVMEDL LSNDPDTAAR LLGSKGLYLM PLSSAQDFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01707.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493414.10.0PREDICTED: uncharacterized protein LOC108863478 isoform X1
TrEMBLA0A078FNV50.0A0A078FNV5_BRANA; BnaC03g49220D protein
TrEMBLA0A3P6BB590.0A0A3P6BB59_BRAOL; Uncharacterized protein
STRINGBo3g100520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-14LJRHL1-like 2