PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01719.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 982aa    MW: 110666 Da    PI: 5.9008
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01719.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1185.65.2e-5851222118
                     CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                              l+e ++rwl++ ei++iL n++k+++++e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYa
  Rsa1.0_01719.1_g00001.1   5 LSEaQHRWLRPAEICEILRNYHKFHIATESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYA 90 
                              45559********************************************************************************* PP

                     CG-1  87 hseenptfqrrcywlLeeelekivlvhylevk 118
                              h+e n++fqrrcyw+Le+el +iv+vhylevk
  Rsa1.0_01719.1_g00001.1  91 HGEGNENFQRRCYWMLEQELMHIVFVHYLEVK 122
                              *****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.2741127IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-844122IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-507121IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.12E-14391477IPR014756Immunoglobulin E-set
PROSITE profilePS5029718.643574656IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-17575685IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-16576686IPR020683Ankyrin repeat-containing domain
CDDcd002043.54E-12580683No hitNo description
PfamPF127969.7E-7581651IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0029624653IPR002110Ankyrin repeat
PROSITE profilePS5008811.22624656IPR002110Ankyrin repeat
SMARTSM000151.9800822IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.01E-7800850IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.693801830IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012802821IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0029823845IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322824848IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4826845IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MEQLLSEAQH RWLRPAEICE ILRNYHKFHI ATESPTRPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVG SIDVLHCYYA HGEGNENFQR RCYWMLEQEL MHIVFVHYLE  120
VKGSRTSIGM KENNSNSLSG SVSVNIDSAA SPTSRLSSYC EDADSVFGGA GDSHQSSSVL  180
QASPEPQTGN HNGWTSAPGM RSDSQRLFDV QAWDAVGNLV TRYDQPCNNL LVEERTDKGG  240
MLAAEHLRSP LQTQLNWQIP AQDDLPLPKW HLAPHSGMAD DTDLALFEQS AQDNFESFSS  300
LLDIEHLQSD GIPPSNMETE FIPVKKSLLR HEDSLKKVDS FSRWASKELG EMEDLQMQSS  360
RGDIAWTTVD CETAAAGLAF SPSLSEDQRF TIVDYWPKCA QTDAEVEVLV IGTFLLSPQE  420
VTICSWSCMF GEVEVPAEIL VDGVLCCHAP PHTAGQVPFY VTCSNRFACS ELREFEFLSG  480
STKKIDAADI YGYSSKETSL QLRFEKLLAH RDFVQEHQIF EDVVEKRRKI SSIMLLNEEK  540
EYLFPGMYER DSTKQEPKER VFREQFEDEL YIWLIHKVTE GGKGPNLLDE GGQGVLHFVA  600
ALGYDWAIKP ILAAGVNINF RDSNGWSALH WAAFSGREET VAVLVSLGAD AGALTDPSPE  660
LPLGKTAADL AYGKEHRGIS GFLAESSLTS YLEKLTMVSK ENSPANSSGS KAVQTVSERT  720
AAPMSYGDVP EKLSMKDSLT AVRNATQAAN RLHQVFRMQS FQRKQLSGFD DDDDELGISN  780
ELAVSFAASK TKNPGQSEVF AHSAATHIQK KYRGWKKRKE FLLIRQRVVK IQAHVRGHQV  840
RKQYKPIVWS VGLLEKIILR WRRKGTGLRG FKRNVVPKTV EPEPLSPMIP KEDDYDFLEK  900
GRKQTEERLQ KALTRVKSMV QYPEARDQYR RLLTVVEGFR ENEASSSLSI NNREEGLVNC  960
EEDDLIDIES ILNDDILMST SP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01719.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4913040.0AF491304.1 Brassica napus calmodulin-binding transcription activator (CAMTA) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446094.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X2
RefseqXP_018446095.10.0PREDICTED: calmodulin-binding transcription activator 1 isoform X2
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLM4CYT50.0M4CYT5_BRARP; Uncharacterized protein
STRINGBra009382.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein