PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01729.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 706aa    MW: 78047.3 Da    PI: 6.7897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01729.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-0858100347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Rsa1.0_01729.1_g00008.1  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                              6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-653103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.51E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MLKNLWAMQA EKEVSLSTQG PVEEGLISNQ NSNPNIASSA SISVAQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGESFS  180
SASLGNISSH SRERGLDNSP FKLILCDSQN VRPGRASTKH GESLGVRIGD EKEDTAVGRC  240
GRRRKQEHLE RTSIDKDMDV QKDLGPTRYL TGKSPLSLPS SGEVPLNDAN MLFSAKLKLQ  300
LFPIDESTRR SLEVDKHNPH LELTLSNRKK ISSVLEHLNR KWGSSSCACG ELMLFPYNAR  360
KETLPLHQRW TNDSFLSAAE VYSMVGRPSL FRLRYGWFVQ DASGSFISQV PTSASYPSLE  420
DNMNVDDANE VNMLLTESGP LSKHSTSEQA TSVVCAAGDR PAETRDNYEP ASATISPFEP  480
LSSGNALSAG AWADSLTNIS IGDLLSEAPD DIDSDCVDPP ANEGSHCLLR DVSFASDSFD  540
AAIAAHILRH QNKPSGLVSM TCGSSSLWDD EDTRDAFSFQ KNRHAKSSPG GIGRVNGELT  600
QVVEAKSGDE GPCNLPDQQG DPMEEGPTDP HTIDSPGKTI YGLADVYWPD SLGPLDLDIR  660
SSKYTEDLNL SDSLGGLSRL IATSLDAFQN CSLFGFDSKK DKSNMV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01729.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441744.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_018441745.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A0D3BRC50.0A0A0D3BRC5_BRAOL; Uncharacterized protein
STRINGBo4g031010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1