PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01743.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 219aa    MW: 23959.8 Da    PI: 8.1351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01743.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038124146123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + Cp+Cg  F+    L  H+r+H
  Rsa1.0_01743.1_g00006.1 124 HICPICGVEFPMGQALGGHMRKH 146
                              68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.84E-76690No hitNo description
PfamPF139121.0E-96791IPR007087Zinc finger, C2H2
SMARTSM003550.626890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8476895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-7119146No hitNo description
PfamPF139122.6E-11123147IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159124151IPR007087Zinc finger, C2H2
SMARTSM003550.056124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVARRSENLD RTVENTAEKL DRTVEDTAAY KETLERTVED KAANCLMLLS RIGENGGGGG  60
GRESRRVYRC KTCMKEFSSF QSLGGHRASH NKHANNSSSD EQSSLSSGSV AKKKKTTTNT  120
TSRHICPICG VEFPMGQALG GHMRKHRNEE EASGALVTRS FFPEATTTTM ITTLKKSSSG  180
KRVACFDFGP ADSVESGINL ELELGINMYD VLVFSEYSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01743.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436507.11e-154PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX857e-67ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3P5YHI81e-107A0A3P5YHI8_BRACM; Uncharacterized protein
STRINGBo3g130310.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-51C2H2 family protein