PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01771.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 475aa    MW: 52948.2 Da    PI: 9.4743
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01771.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.13.3e-5517114198
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdr+lPian+srimk++lP n+ki+kdak+tvqecvsefisfvtseasd+cq+ekrkt+ng+dllwa++tlGfedy+eplk+y
  Rsa1.0_01771.1_g00002.1  17 VREQDRYLPIANISRIMKRALPPNGKIGKDAKDTVQECVSEFISFVTSEASDRCQKEKRKTVNGEDLLWAMTTLGFEDYLEPLKLY 102
                              59************************************************************************************ PP

                    NF-YB  87 lkkyrelegekk 98 
                              l++yreleg++k
  Rsa1.0_01771.1_g00002.1 103 LARYRELEGDNK 114
                              *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5215125IPR009072Histone-fold
SuperFamilySSF471131.86E-3920126IPR009072Histone-fold
PfamPF008081.7E-262387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.6E-205169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.6E-207088No hitNo description
PRINTSPR006153.6E-2089107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MADTPSSPGG GESGGSVREQ DRYLPIANIS RIMKRALPPN GKIGKDAKDT VQECVSEFIS  60
FVTSEASDRC QKEKRKTVNG EDLLWAMTTL GFEDYLEPLK LYLARYRELE GDNKGSGKSG  120
ESNNRDAAGG GSGEDLPLVR RKVSSELFRN KEQHQHDQGI AEISVVVFRF ELMVDYFLFR  180
DSISGRQKVN IEQPVKDKES EWNHRRSLAW DSAFFTTPGV LDHEELFGRL KLGENEIDVN  240
QKDSIKNTLL PHVSSEIATR PSFAWDNAFL TEPGVLDAEE LSLVNNGFTS NTQPRTSADS  300
MTTATEGSRF SVSSIELDLF NDLRASLSNV KQKGAKEVQC KLPDGNKRTK WYKLKSQRLS  360
LIPQPKVYPS SSSVSKSLTP RQAKPEKEVV ASEQGNKGSK SIIRSSYKGK DSTSSSSGLR  420
LPLPKMGFFE SENDGDKENK EPNASANRRR RHKSKLETLS SQENLSVLGQ RKTRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-4216108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4216108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01771.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532481e-137AK353248.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464164.10.0PREDICTED: uncharacterized protein LOC108835406
TrEMBLA0A3P6A7G90.0A0A3P6A7G9_BRACM; Uncharacterized protein
STRINGBra000103.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1505322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-77nuclear factor Y, subunit B1