PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01781.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 258aa    MW: 29425.5 Da    PI: 6.8337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01781.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-1475127155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++++h e+Er+RR+++ s f +Lr +lP+      ++K s ++ +++Av+YIk+L+
  Rsa1.0_01781.1_g00004.1  75 KKAKHREIERQRRQEVTSLFKNLRYILPSqY---IKGKRSSSDHVQEAVNYIKDLE 127
                              6899*************************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1472147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-1072130No hitNo description
PROSITE profilePS5088813.85974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1175146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-1275127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDFTSSSLFT ADFALENELD LSSLITPSTF IPFQEPTPST PIIHCAGAEN DGRQRIRETT  60
ITDEITNEDV EPKNKKAKHR EIERQRRQEV TSLFKNLRYI LPSQYIKGKR SSSDHVQEAV  120
NYIKDLEKKI TEISEKRDRI KRSISHSSST GECSIRSLES SYCSCDGDTH IDVKVRTCLV  180
GIEIVASCCF RQESCLSSIL QLLVQQQCLD VVSCISSRLH PRFIHTIVCK VENGIEVNFL  240
ELQEKMIKMA KLCSYGYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01781.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439496.10.0PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-123BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A0D3DXR11e-167A0A0D3DXR1_BRAOL; Uncharacterized protein
STRINGBo8g108110.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]