PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01783.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 188aa MW: 20737.4 Da PI: 10.1414

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01783.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	152.9	2.3e-47	40	178	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ ++ ++++++k+ + ++s+k s Rsa1.0_01783.1_g00009.1 40 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAATRS----SS--------SSSDRNKKLKLHSSDK--PKSVL 111 6789************************************9765431....12........2233333333332222..23334 PP DUF702 90 klssaeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++++s++e+++++ lP +++++a+fr++rv++v++ +++e++Yq++v+i+GhvfkG+L+++G+++ Rsa1.0_01783.1_g00009.1 112 IVPTTTSRQETSFKEgLPGKIEAPAIFRRTRVTAVSNnEQAEIGYQATVTISGHVFKGFLHYYGADH 178 4455555555555555***************9868899********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-45	42	177	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.8E-27	43	84	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.9E-28	128	175	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MLGLRNTIFL PQPPSQVTSS VNFAAVEENN KSSRNSSNVE EKVCKDCGNR AKKECLFERC 60 RTCCKSRGYN CATHVKSTWV PSSAATRSSS SSSDRNKKLK LHSSDKPKSV LIVPTTTSRQ 120 ETSFKEGLPG KIEAPAIFRR TRVTAVSNNE QAEIGYQATV TISGHVFKGF LHYYGADHNK 180 AFPCLSNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01783.1_g00009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486811.1	1e-125	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	1e-93	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	A0A397YB20	1e-112	A0A397YB20_BRACM; Uncharacterized protein
STRING	Bra007072.1-P	1e-108	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	6e-86	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]