PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01789.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 182aa    MW: 20309.3 Da    PI: 4.3038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01789.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19757155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Rsa1.0_01789.1_g00007.1  7 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 57
                             89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-12757IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21767IPR016177DNA-binding domain
CDDcd000181.35E-28767No hitNo description
SMARTSM003806.2E-32871IPR001471AP2/ERF domain
PROSITE profilePS5103221.904865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-29866IPR001471AP2/ERF domain
PRINTSPR003674.0E-9920IPR001471AP2/ERF domain
PRINTSPR003674.0E-93147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGPSSSKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS PEKAARAFDA ALFCLRGSAA  60
KFNFPDNPPA ISGGGNMSRS EIREAAARFA NSEENVARDE MVQQQQEEST MMEIDSEFLS  120
VLPTVGSGNF ASDFGLFPGF DDDFAGEYSG DRFIEQVSPT WNGGYYQGDE CYDDGSVSLW  180
NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16365972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01789.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449728.11e-123PREDICTED: ethylene-responsive transcription factor ERF017-like
RefseqXP_018449740.11e-123PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-90ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D3DQC31e-102A0A0D3DQC3_BRAOL; Uncharacterized protein
STRINGBo8g068370.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-82ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]