PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01791.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 1768aa    MW: 196321 Da    PI: 8.7159
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01791.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.16.7e-45312202184
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fs 85 
                              ++lLl+cA+a++s+d++laq++++ +s+las+dgd++qRla+ +++AL +r a   s  ++ l++ + s+++  +++++ +l  f+
  Rsa1.0_01791.1_g00001.1  31 EQLLLHCANAIESNDATLAQQTIWVISNLASSDGDSTQRLASSLLRALISRAAT-RSPAFSFLSAAPVSQET-LHRFSVIELasFV 114
                              79**************************************************98.66666677777776444.44445555556** PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg...skeeleetger 164
                              +++P+++f++++aN aIl+av+g + vHi+D+++++++Q p+L++++a++     ++pp l++T+v ++++       ++ee+g +
  Rsa1.0_01791.1_g00001.1 115 DLTPWHRFGFIAANAAILDAVKGYSSVHIVDLSLTHCMQIPTLIDSMATKLinkgQPPPLLKLTVVLAESPPpplLGISYEELGLK 200
                              ************************************************99988878899*******9988778888999******* PP

                     GRAS 165 LakfAeelgvpfefnvlvak 184
                              L +fA++ ++ +ef++++++
  Rsa1.0_01791.1_g00001.1 201 LVSFATTRNIAMEFRIIYSS 220
                              ***************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.274226IPR005202Transcription factor GRAS
PfamPF035142.3E-4231220IPR005202Transcription factor GRAS
PfamPF142448.7E-17274320IPR029472Gag-polypeptide of LTR copia-type
PfamPF142231.3E-8329474No hitNo description
PfamPF139762.2E-12721786IPR025724GAG-pre-integrase domain
PROSITE profilePS5099420.925797961IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.106.7E-27797954IPR012337Ribonuclease H-like domain
PfamPF006656.3E-18799912IPR001584Integrase, catalytic core
SuperFamilySSF530982.43E-38800970IPR012337Ribonuclease H-like domain
SuperFamilySSF566722.11E-3512761497No hitNo description
PfamPF077271.3E-8912761518IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566722.11E-3515271709No hitNo description
CDDcd092724.34E-6816021741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1768 aa     Download sequence    Send to blast
MNKAMILNPT RPVWPGFSSS KSLCGDANCM EQLLLHCANA IESNDATLAQ QTIWVISNLA  60
SSDGDSTQRL ASSLLRALIS RAATRSPAFS FLSAAPVSQE TLHRFSVIEL ASFVDLTPWH  120
RFGFIAANAA ILDAVKGYSS VHIVDLSLTH CMQIPTLIDS MATKLINKGQ PPPLLKLTVV  180
LAESPPPPLL GISYEELGLK LVSFATTRNI AMEFRIIYSS YSDGLSSYRD NDTYSTSSTA  240
SVGSLMSTST GSLTTTPIGA LPASTTPDTP YHLHHSDNPG ALITPVILKG DNYSEWATEF  300
WNSLQAKQKI GFIDGTIPKP LTNPELAKWT AANSMIVGWI RTSIDPTVRS TVSHVPDAFL  360
LWESLKRRFS VTNGVRKHLL QDDITNCKQN GDTVLQYYGR LSKLWEELQN FQITQPCSCA  420
ASATIEKEKE DARVHKFLFG LDASRFSSIR SQIIDEDPLP DLNSVYSRVV RAEQTLVTTR  480
SSELKQDIIG FSVKTESAVV PASSTTNRNR DPNRFCTHCN RKGHESTECF LLHGYPDWYN  540
EQQQRSTQSS ARGRGGRSNN SARGRGRSNS RTPASTFSGN ATASSDQIAS LIALLQNQQS  600
NLSTDNMSGK IKLTDVIIDT GASHHMTGNI RLLHNIRSIL PSSVKFPNGR VSSATHTGTL  660
RLSADYALFD VLYIPDFDCT LISVSKLLRQ TGCIAIFTDT LCVLQDRFTR TLIGAGEERE  720
GVYYFTGVTV ARAHRIGAEK SSSSVLWHRR LGHPSYQVLS SLPALDSFKF DFDHTSPCEI  780
CFRAKQTRDS FKESFNKATE PFALIHCDVW GPYRTPASCG AVYFLTIVDD FSRSVWIHLM  840
LEKSEVSRLL QNFCAMSLRQ FDKLVKTVRT DNGTEFMVLK TYFRSQGIQL QTSCVDTPQQ  900
NGRVERKHRH ILNVARACLF QARLPVSFWG QSVLTAAHLI NRTPTRLLHG KSPYEVLFGS  960
PPSYDSLRVF GCLCYVHAKS RSKDKFSTRS RRCLFMGYPY GKKAWNVYDL DTNEFFISRD  1020
VTFVETEFPG FDDQEHVSPP LVQNDIAFDD WLLPSPTPTS STPPVAPTPT PLVPTPTPIV  1080
PTSTSIAPTT THIPLTSTPI PSTSTPLDPT SASLDPASLP TNPMSSVTPT VIDPPAVTTT  1140
TSSSLTPPSS PTSKELSSLP SAEAQSPGLP VILGRGHRER KPSVLLKNFV AQAVYSSNTH  1200
SSQSEPVSGN GPCITSPGNT LYPISNFLSD VTFSASHRAF VAAVTMSVEP RSYNEAVLDK  1260
VWRDSMTEEH AAHIANGTWD VTDLPPGKKC IQCMWIYKNK YHSNGKISRH KSRLVACGNR  1320
QKEGLDYKET FAPVAKPSTV RILLQITAAK KWEVHQMDVH NAFLHGDLKE EVYMRLPPGF  1380
QGPDPTKVGR LRKSIYGLKQ APRCWFSKLS DALLSYGFEQ SHSDSSHFFF IRGKIDLHIL  1440
VYVDDFVIAC NDITTLQKFK NYLGQCFHMK DLGRLKYFLG IEVARSDGGI FLSQRKYALD  1500
IVTETGLLGC KPASTPMELN HKLLKAEGPP VSDVKAYRRL IGRLIYLTFT RLELCYSVHI  1560
LCQFMQSPLQ PHWDAALRVV RYLKGTLSQG VLLRSDSDLR VTAYCDADWG SCSLSRRSIS  1620
AYIVLLGNSP VTWKAKKQDV VSASSAEAEY RSMAYALREL KWVKQVLETF GIDHKEPMRL  1680
FCDSKSAIYI AANPVFHEKT KHMERDCHQV RDAVKAKLIT TEHITTKEQP ADILTKSLPT  1740
PTFVYLLSKL GILDISRQLE GGYRDNDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-212021877276Protein SHORT-ROOT
5b3h_B1e-212521828222Protein SHORT-ROOT
5b3h_E1e-212521828222Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01791.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479887.10.0PREDICTED: uncharacterized protein LOC108850934
TrEMBLO221750.0O22175_ARATH; Putative retroelement pol polyprotein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-81GRAS family protein