PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01791.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 252aa    MW: 27376.8 Da    PI: 7.9458
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01791.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.48.6e-322103197
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++
  Rsa1.0_01791.1_g00002.1   2 SCNGCRVLRKGCSENCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLW 87 
                              6*********************9998666778****************************************************** PP

                   DUF260  82 klqqqleqlkaelall 97 
                              +++++++q+++e++l+
  Rsa1.0_01791.1_g00002.1  88 TGNWNVCQAAVETVLR 103
                              **********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.431107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNVCQAAVET VLRGGSLRPI PELLAHGGGG  120
FAGFPTATSE EASEICTEML SLQHNDGSSD DRNMYHHSRF SSSRSRSRLD SSPTKRKRVE  180
QQPSSELDLS LIPNFPVKTT PCSTRQRSRT PSMNSEESVT TTTTTTPTSF WDNTAAGGDL  240
YGNGSKLLNL FV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01791.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892588e-74AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433951.10.0PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-132LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A291LR191e-149A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBLA0A397YK281e-149A0A397YK28_BRACM; Uncharacterized protein
TrEMBLM4D6Q41e-149M4D6Q4_BRARP; Uncharacterized protein
STRINGBra012164.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-122LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]