PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01793.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 163aa    MW: 18075.4 Da    PI: 5.011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01793.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.93.5e-246107297
                   DUF260   2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvil 81 
                              CaaCk+  +  C+    + C++ap fp+++p kf  v+k+FG+ nv k+l+ l ++ +re a+++l+yeAear++dP++G + + l
  Rsa1.0_01793.1_g00002.1   6 CAACKFTSNgPCTlgngDACIMAPFFPSTEPDKFDRVNKVFGVVNVYKILSILeEPLQREYAVNALCYEAEARIQDPIHGNYDLKL 91 
                              ******98878*8554467**********************************45556**************************** PP

                   DUF260  82 klqqqleqlkaelall 97 
                              ++ + l++ k +++++
  Rsa1.0_01793.1_g00002.1  92 AYDNILNKFKRDIDSA 107
                              *999999999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7844111IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-236106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDLAICAACK FTSNGPCTLG NGDACIMAPF FPSTEPDKFD RVNKVFGVVN VYKILSILEE  60
PLQREYAVNA LCYEAEARIQ DPIHGNYDLK LAYDNILNKF KRDIDSAINE LEIPTDKDQK  120
NQLKRLVDAR RNAIIGMREN EQGGVHRADG ASTSSGPANQ NQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-22411110111LOB family transfactor Ramosa2.1
5ly0_B9e-22411110111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01793.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479170.11e-115PREDICTED: LOB domain-containing protein 32-like
SwissprotO496512e-26LBD32_ARATH; LOB domain-containing protein 32
TrEMBLA0A0D3DFG33e-68A0A0D3DFG3_BRAOL; Uncharacterized protein
STRINGBo7g108110.16e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.17e-29LOB domain-containing protein 32