PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01797.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 142aa    MW: 16239.9 Da    PI: 10.4688
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01797.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA29.62.3e-09961163656
                CBFB_NFYA  36 kpylheSRhkhAlrRpRgsgG 56 
                               pylheSRh hAl+R Rg+  
  Rsa1.0_01797.1_g00006.1  96 TPYLHESRHLHALKRVRGQVA 116
                              69****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020451.2E-692115IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS511529.74597121IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MQVCSCKIKI HPQCNLLENQ VAAVKLQALE SIPVSQVTSR TRESLLKVIQ LPSSMVSRDS  60
VFPPPASGLA SWPPQCPDET PHFNGFLAPE YASQPTPYLH ESRHLHALKR VRGQVARWAF  120
PQYKEASRTI KLTLWWWKRK RV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01797.1_g00006.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-16nuclear factor Y, subunit A5