PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01801.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 438aa    MW: 47704.8 Da    PI: 7.7342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01801.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07114135426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + Cr++   G C++Gd+C+F H+
  Rsa1.0_01801.1_g00006.1 114 KVCRYWVD-GSCSHGDKCRFLHC 135
                              68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.123055IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.9953056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6111134IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4112136IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5113135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6114130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.0E-16131241IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-5141180IPR001680WD40 repeat
SuperFamilySSF509784.49E-47144431IPR017986WD40-repeat-containing domain
PfamPF004003.1E-5145180IPR001680WD40 repeat
PROSITE profilePS5029420.725148397IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.251148189IPR001680WD40 repeat
PROSITE patternPS006780167181IPR019775WD40 repeat, conserved site
PRINTSPR003208.1E-7167181IPR020472G-protein beta WD-40 repeat
SMARTSM003203.4220257IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.0E-31242431IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.054264301IPR001680WD40 repeat
PROSITE profilePS5008211.31271310IPR001680WD40 repeat
PRINTSPR003208.1E-7288302IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2E-4304341IPR001680WD40 repeat
PfamPF004000.0027306340IPR001680WD40 repeat
PRINTSPR003208.1E-7328342IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9345388IPR001680WD40 repeat
SMARTSM003203.4391428IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFDSNGGNK RVFNRLGGGP TRPSPQTGSR QQQQVCYHWR SGRCYRNPCQ FLHRELPGPD  60
PGHTTNNNKR IADESGFAGP SHRRGPGFNN GNSNNNNTWG RFGGNRTVLT KTEKVCRYWV  120
DGSCSHGDKC RFLHCWSKGD GFALLTQLDG HEKLVSGIAL PAGSDKLYTG SKDGTVRVWD  180
CASGQCTSVL NLGAEVGCVI SEGPWLLVGM PNLVKAWNME TNVDQSLSGP VGQVYSLVVG  240
TDLLFAGTQD GSILAWRYNA ATNCFEPAAS LMGHTLAVVT LYVGANRLYS GSMDKSIKVW  300
SLENLQCLQT LTDHTSVVMS LICWDQFLLS CSLDNTVKIW AAVEGGNLEV TYTHKEEHGV  360
LALCGVHDAE AKPVLLCSCN DNTLRLYDLP SFTERGKIFA KQEIRSIQIG PGGIFFTGDG  420
TGQVKVWKWS TPPAAAMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211334348320Tako8
6g6n_A4e-211334348320Tako8
6g6n_B4e-211334348320Tako8
6g6n_C4e-211334348320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01801.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476838.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EK320.0M4EK32_BRARP; Uncharacterized protein
STRINGBra029149.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein