PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01819.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 299aa MW: 33563.9 Da PI: 8.461

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01819.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.4	3.1e-31	61	176	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak ++el+ + Rsa1.0_01819.1_g00004.1 61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsa 146 78*************************************************************66666666555555555544444 PP TCP 66 .............................s 66 + Rsa1.0_01819.1_g00004.1 147 asafpgtnlgfleswniggsssrtrsriaD 176 444444444333333333333333322221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.424	62	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.9E-30	62	199	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MTSREFDEEE TQAKKERDHN HQLNLNNMLQ QQNQPSSAPT SRQWTSAFRN PRIVRVSRTF 60 GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL 120 PPLQFPQGFN QMYPSLIFGE SSSTSAASAF PGTNLGFLES WNIGGSSSRT RSRIADTTPR 180 ESFDLDKGKW VKQDENSNQD HGFNTSQQHF SLTNLYNNNN NASSYYNLGH VQHSLDQPGN 240 NVTVAISNVP YNNNLNLPPP PTMSSLFPTY PSFLGASHHV VDGAGNLQLF SSNANRNNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-18	67	121	1	55	Putative transcription factor PCF6
5zkt_B	3e-18	67	121	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01819.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437652.1	0.0	PREDICTED: transcription factor TCP5-like
Swissprot	Q9FME3	1e-143	TCP5_ARATH; Transcription factor TCP5
TrEMBL	M4EKM7	0.0	M4EKM7_BRARP; Uncharacterized protein
STRING	Bra029344.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-119	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]