PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01827.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 404aa MW: 45076.6 Da PI: 5.5504

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01827.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.8	2.8e-20	309	359	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++++d+s+ F+lpi++AA+ L +c+T++K iCR+ + RWP+Rk+ksl Rsa1.0_01827.1_g00011.1 309 TKKLTVKDMSELFELPIEKAARRLRICTTAVKLICRRGEVYRWPQRKLKSL 359 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.698	299	379	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-17	311	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MAGDGPKPMA LQVNEDEDLY YDAYSEEDLI NFMSNPNPNL MDLPFPQEPL PPPTGLLQNP 60 SLISLPKRDT IKEYLESLKI GDDSFTLDTS DLLSGDLSDC IDYTVRGEFG NDNVGESGIL 120 EASTHVFVEN AYNSEIGGSS TMPVPVITPA PTISQGVFLC TYCNLLRQLV HANGLEMMRL 180 DLYGGIGYFC HAIIETRRFD GSNELRYQTC HLMDLLMEDV KKFIEDYCAA RAASGFVIMQ 240 DTNADFYQAM NACTTNSQSL MSTLPPRVDI PVSLAMPNES LIVASVPPAV KVKGRPRKET 300 HLSAQRKRTK KLTVKDMSEL FELPIEKAAR RLRICTTAVK LICRRGEVYR WPQRKLKSLR 360 EKVAALKNVV SNSTDARARA RAEGKIEKFE KQINAIYSKA IENA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MAGDGPKPMA LQVNEDEDLY YDAYSEEDLI NFMSNPNPNL MDLPFPQEPL PPPTGLLQNP  60
SLISLPKRDT IKEYLESLKI GDDSFTLDTS DLLSGDLSDC IDYTVRGEFG NDNVGESGIL  120
EASTHVFVEN AYNSEIGGSS TMPVPVITPA PTISQGVFLC TYCNLLRQLV HANGLEMMRL  180
DLYGGIGYFC HAIIETRRFD GSNELRYQTC HLMDLLMEDV KKFIEDYCAA RAASGFVIMQ  240
DTNADFYQAM NACTTNSQSL MSTLPPRVDI PVSLAMPNES LIVASVPPAV KVKGRPRKET  300
HLSAQRKRTK KLTVKDMSEL FELPIEKAAR RLRICTTAVK LICRRGEVYR WPQRKLKSLR  360
EKVAALKNVV SNSTDARARA RAEGKIEKFE KQINAIYSKA IENA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01827.1_g00011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445336.1	0.0	PREDICTED: uncharacterized protein LOC108817191
TrEMBL	A0A3P6D0L6	0.0	A0A3P6D0L6_BRAOL; Uncharacterized protein
STRING	Bo2g012920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-11	RWP-RK domain-containing protein