PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01836.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 754aa MW: 83251.9 Da PI: 6.641

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01836.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.6	7.6e-19	15	65	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g Rsa1.0_01836.1_g00008.1 15 TKFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 65 5899****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.76E-29	15	72	No hit	No description
Pfam	PF00847	1.8E-11	16	65	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-28	16	73	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.719	16	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-20	16	74	IPR016177	DNA-binding domain
SMART	SM00380	2.3E-34	16	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-7	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-7	39	55	IPR001471	AP2/ERF domain
Pfam	PF14368	2.8E-12	210	293	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SuperFamily	SSF47699	2.55E-11	219	295	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3D	G3DSA:1.10.110.10	4.9E-11	220	293	No hit	No description
CDD	cd00010	8.78E-16	223	285	No hit	No description
PROSITE profile	PS51322	45.556	377	521	IPR008883	Ubiquitin E2 variant, N-terminal
Gene3D	G3DSA:3.10.110.10	9.0E-43	381	520	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
SuperFamily	SSF54495	2.53E-30	382	517	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
Pfam	PF05743	3.7E-37	397	517	IPR008883	Ubiquitin E2 variant, N-terminal
Pfam	PF09454	6.5E-22	675	735	IPR017916	Steadiness box (SB) domain
PROSITE profile	PS51312	12.427	678	746	IPR017916	Steadiness box (SB) domain
SuperFamily	SSF140111	3.53E-18	680	738	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006464	Biological Process	cellular protein modification process
GO:0015031	Biological Process	protein transport
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA 60 RSMRGTRART NFVYSDMPPS SSVTSIISPD DPPPPPPPPA AATPCSNDHV DYMMMFNQYS 120 STDSPMLQPN QVESSYMFGG SPSCYSNSSS ELPPLPSDLS NSCYSQQPWS VEDYSSATYF 180 EGEYVHSPMF STMPSVSDSL PQVVANFGIM HTSGQSVSCL NQLAPCLNYL NGTKDVPEVC 240 CNPLKLVIRN NPECLCRMIS NRGSSKAEQA GINVNDAQML PARCGEHVNP IACLTRSRGS 300 TNSDRSSSTG NSSSQSYWMT TIAFACSLIN VPLDDNPRLA RGPSSALIKS RFILSMAPPP 360 GTDPAKLQQI QQFLTSVLSQ RGPTALPYAE TTKWLIRQHL LTLISSYSSL EPKTATFTHN 420 DGRSAILLQA DGTVPMPFQG VSYNIPVVLW LLESYPRDPP RVYVNPTRDM IIKRPHSNVS 480 PSGLVSLPYL HAWVYPSSNL LDLAAQLSSA FSRDPPLYSQ RRPPPQSSPS IGSGYSPSPS 540 IGSGYSRPSP SPPIGSGYAR PPPPSYHQQQ QQTDDAAEVY KRNAINKLVE MVHVDLVTMR 600 SVREAEAEGL LSLQATLERR EGELARGLRE MVSEKETLEQ ELQVVSMNTD VLDSWVRENQ 660 GRSKTDLDDV DSAFVCLETM SKQMLECTAS DLAIEDAVYA MDKSFRDGVL PFDQYLRSVR 720 LLSREQFFHR AKAEKVRGMQ MEAQVASIAA RLQL

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA  60
RSMRGTRART NFVYSDMPPS SSVTSIISPD DPPPPPPPPA AATPCSNDHV DYMMMFNQYS  120
STDSPMLQPN QVESSYMFGG SPSCYSNSSS ELPPLPSDLS NSCYSQQPWS VEDYSSATYF  180
EGEYVHSPMF STMPSVSDSL PQVVANFGIM HTSGQSVSCL NQLAPCLNYL NGTKDVPEVC  240
CNPLKLVIRN NPECLCRMIS NRGSSKAEQA GINVNDAQML PARCGEHVNP IACLTRSRGS  300
TNSDRSSSTG NSSSQSYWMT TIAFACSLIN VPLDDNPRLA RGPSSALIKS RFILSMAPPP  360
GTDPAKLQQI QQFLTSVLSQ RGPTALPYAE TTKWLIRQHL LTLISSYSSL EPKTATFTHN  420
DGRSAILLQA DGTVPMPFQG VSYNIPVVLW LLESYPRDPP RVYVNPTRDM IIKRPHSNVS  480
PSGLVSLPYL HAWVYPSSNL LDLAAQLSSA FSRDPPLYSQ RRPPPQSSPS IGSGYSPSPS  540
IGSGYSRPSP SPPIGSGYAR PPPPSYHQQQ QQTDDAAEVY KRNAINKLVE MVHVDLVTMR  600
SVREAEAEGL LSLQATLERR EGELARGLRE MVSEKETLEQ ELQVVSMNTD VLDSWVRENQ  660
GRSKTDLDDV DSAFVCLETM SKQMLECTAS DLAIEDAVYA MDKSFRDGVL PFDQYLRSVR  720
LLSREQFFHR AKAEKVRGMQ MEAQVASIAA RLQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2f0r_A	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
2f0r_B	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
4eje_A	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
4eje_B	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
4yc1_A	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
4yc1_B	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
4yc1_C	6e-26	395	520	34	158	Tumor susceptibility gene 101 protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). {ECO:0000250\|UniProtKB:Q9LHG8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01836.1_g00008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189212	0.0	AC189212.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446247.1	0.0	PREDICTED: protein ELC-like
Swissprot	Q9FFY6	0.0	ELCL_ARATH; Protein ELC-like
TrEMBL	A0A3P6ALZ0	0.0	A0A3P6ALZ0_BRACM; Uncharacterized protein
STRING	Bra023439.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	5e-56	ERF family protein

Publications ? help Back to Top
Bachmair A,Novatchkova M,Potuschak T,Eisenhaber F Ubiquitylation in plants: a post-genomic look at a post-translational modification. Trends Plant Sci., 2001. 6(10): p. 463-70 [PMID:11590065] Winter V,Hauser MT Exploring the ESCRTing machinery in eukaryotes. Trends Plant Sci., 2006. 11(3): p. 115-23 [PMID:16488176] Spitzer C, et al. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Development, 2006. 133(23): p. 4679-89 [PMID:17090720] Shahriari M, et al. The Arabidopsis ESCRT protein-protein interaction network. Plant Mol. Biol., 2011. 76(1-2): p. 85-96 [PMID:21442383] Richardson LG, et al. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Front Plant Sci, 2011. 2: p. 20 [PMID:22639582] Gao C, et al. A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth. Curr. Biol., 2014. 24(21): p. 2556-63 [PMID:25438943]