PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01853.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 521aa MW: 57697.8 Da PI: 6.713

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01853.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.6e-30	232	291	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Rsa1.0_01853.1_g00001.1 232 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHNHP 291 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	217	293	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-27	225	293	IPR003657	WRKY domain
PROSITE profile	PS50811	28.334	227	293	IPR003657	WRKY domain
SMART	SM00774	3.3E-35	232	292	IPR003657	WRKY domain
Pfam	PF03106	3.9E-26	233	291	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MENEDFLRSS GHGREERHED TRKLISSSDD SHQEHNLIIR SKLESIRVEM EEAKEENRRL 60 KSSLNRTKRD FEILQIQYNQ LMVQHEDPNK FSPKSHHQDK DKDEDKGNIS KREELVLLSL 120 GSMTNKEEKG KGLMDEIGDR KQIDEHDKRN EQGLSMGLEY KDLSNPSEKL EIDHSQEKTT 180 LEVSNSNKIP SENSFGLKND GDDHEDEEEL LPQNLVKKTR VSVRSRCETP TMNDGCQWRK 240 YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDMSIL ISTYEGTHNH PLPASATAMA 300 AATSAAASML LSGASSSGAA DLHGLNFSLS GNPKPKSPSL QTSFSPSSSG HPTVTLDLTA 360 SSSSQQTFLS MLNRFSAPPS NVSRSNSYPS TNLNFSNNTN TLMNWGGSSG HLNEKYRAAY 420 GNIGTHQQSP YHHMIQTQPA GSSFDTFGRS SSSSLHPTKT NLDHVGIKNI THQVQSLPAE 480 TIKAITTDPS FQSALATALS SIMGGDLKMD NVTKDEAKES S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MENEDFLRSS GHGREERHED TRKLISSSDD SHQEHNLIIR SKLESIRVEM EEAKEENRRL  60
KSSLNRTKRD FEILQIQYNQ LMVQHEDPNK FSPKSHHQDK DKDEDKGNIS KREELVLLSL  120
GSMTNKEEKG KGLMDEIGDR KQIDEHDKRN EQGLSMGLEY KDLSNPSEKL EIDHSQEKTT  180
LEVSNSNKIP SENSFGLKND GDDHEDEEEL LPQNLVKKTR VSVRSRCETP TMNDGCQWRK  240
YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDMSIL ISTYEGTHNH PLPASATAMA  300
AATSAAASML LSGASSSGAA DLHGLNFSLS GNPKPKSPSL QTSFSPSSSG HPTVTLDLTA  360
SSSSQQTFLS MLNRFSAPPS NVSRSNSYPS TNLNFSNNTN TLMNWGGSSG HLNEKYRAAY  420
GNIGTHQQSP YHHMIQTQPA GSSFDTFGRS SSSSLHPTKT NLDHVGIKNI THQVQSLPAE  480
TIKAITTDPS FQSALATALS SIMGGDLKMD NVTKDEAKES S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	219	293	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01853.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436079.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A078GAF5	0.0	A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBL	A0A3P5YSN3	0.0	A0A3P5YSN3_BRACM; Uncharacterized protein
STRING	Bo8g103030.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]