PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01853.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 144aa MW: 15821.6 Da PI: 6.2641

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01853.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.2e-07	74	110	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +WT+ E+++++ + ++ G+g+ k+I+r + k Rt+ q Rsa1.0_01853.1_g00008.1 74 AWTESEHKRFLLGLQRVGKGDSKAISRNFVKSRTPTQ 110 7*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.95E-7	69	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-8	70	110	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.8E-5	73	110	IPR009057	Homeodomain-like
CDD	cd00167	3.71E-4	74	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MLFGVRVVVD PMRKCVSLNN LSDYEKSSPE EEIPKIGDAE DKTEPDAGYA SANDAVQIPS 60 SSVGNHRERK QGVAWTESEH KRFLLGLQRV GKGDSKAISR NFVKSRTPTQ DAAPLSLNLS 120 LSFNLNEPSN SRHSMMPSFS DGDI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01853.1_g00008.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068602	3e-35	AC068602.2 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence.
GenBank	AK316815	3e-35	AK316815.1 Arabidopsis thaliana AT1G19000 mRNA, complete cds, clone: RAFL08-11-F04.
GenBank	AY045881	3e-35	AY045881.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.
GenBank	AY079415	3e-35	AY079415.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.
GenBank	AY088105	3e-35	AY088105.1 Arabidopsis thaliana clone 41381 mRNA, complete sequence.
GenBank	CP002684	3e-35	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599652.1	3e-59	PREDICTED: transcription factor MYB1R1-like isoform X1
Refseq	XP_013599653.1	2e-59	PREDICTED: transcription factor MYB1R1-like isoform X2
Swissprot	Q2V9B0	4e-36	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0D3DWJ5	4e-59	A0A0D3DWJ5_BRAOL; Uncharacterized protein
STRING	Bo8g102960.1	6e-60	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-57	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]