PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01878.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 396aa    MW: 45565.1 Da    PI: 5.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01878.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-10214256754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                Er+RR+r+N+++  Lr l+P       +K++K   L  Av+YI++L
  Rsa1.0_01878.1_g00004.1 214 HSERKRRERLNQRIYALRALVPVM-----TKMNKNGALSDAVDYINEL 256
                              57*********************8.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-189159IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.83E-14198268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-10205261No hitNo description
PROSITE profilePS5088814.481207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-13214270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-8214256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMRSVERVKE FLRPLVDSRD WDFCVIWKLG DDPSRFIEWM GCCCSGSYID NNIKHENVEV  60
EEQEERQKMM SCICRDEHNK HHIRSLACES LSRFPLFIPL YPGIHGEVVM SKSPKWLINS  120
GLGSKQDMFR TRVLVPVRDG LVELFSFTMK PVDESMVDVI ISHCNAFFEP FPEQTFPCGE  180
QAPCLTVMNK QENVVMQDNK KLTNNENFKS KNLHSERKRR ERLNQRIYAL RALVPVMTKM  240
NKNGALSDAV DYINELLVEK QKLEDEVSGI SEVECRAEEE AVIANPEAEK VSYELNKKEN  300
NNEVNLEVHE TGEGDFLIRV AQGHKRDGFK RLIEAVDSCG LEIIHVNFTR LDLSVMTILN  360
VKANKDGTTR EDLRDLLLEM MITSENPNAE SAKQCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01878.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432718.10.0PREDICTED: transcription factor bHLH90-like isoform X2
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A078HDG50.0A0A078HDG5_BRANA; BnaA09g48040D protein
STRINGBra031723.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein