PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01881.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 389aa MW: 42692.8 Da PI: 5.2387

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01881.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	121.3	4.8e-38	162	250	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 +fqrlw+eeDei++LqG+idfk++tgksp++d++ y+++kksisf+vsk+q+++Kir+L+kK+ +k+k sf+k+hdqk Rsa1.0_01881.1_g00002.1 162 AFQRLWTEEDEIAVLQGMIDFKKETGKSPYEDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQK 240 69*************************************************************99876.......***** PP DUF573 88 ifelskkiWg 97 ++ l++ iWg Rsa1.0_01881.1_g00002.1 241 SYRLCQYIWG 250 *******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.8E-30	163	250	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSKKRNPLED PPAASSSDDE EVESSAEEEE EEEDDDSSSE EDAPAKPPSS SAAAVTIAVP 60 GKPTASLPAA TQASDSESGS ETETDSESEP EQPTKNKGSG KAILTAKPAP PPPPVALALP 120 AKKSGAKRPS EVSSSKETTN SKRVKKDVED KKMGEDSKKP GAFQRLWTEE DEIAVLQGMI 180 DFKKETGKSP YEDTNVYYDY IKKSISFEVS KNQFMDKIRS LRKKYIGKEK PSFTKPHDQK 240 SYRLCQYIWG PDGMGLESAV KSNGASKKSQ KKTKKLDSVK QELSFGASPN GKAVVGDDEE 300 KDVESSLAAK KHDWFENSFL VKGIAGFGVD EHCVKQRWSL VPVETKKKVE EKLKLLQAKE 360 IEYVLQKTEV LHEVTSMIAE ASKNKLLDI

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSKKRNPLED PPAASSSDDE EVESSAEEEE EEEDDDSSSE EDAPAKPPSS SAAAVTIAVP  60
GKPTASLPAA TQASDSESGS ETETDSESEP EQPTKNKGSG KAILTAKPAP PPPPVALALP  120
AKKSGAKRPS EVSSSKETTN SKRVKKDVED KKMGEDSKKP GAFQRLWTEE DEIAVLQGMI  180
DFKKETGKSP YEDTNVYYDY IKKSISFEVS KNQFMDKIRS LRKKYIGKEK PSFTKPHDQK  240
SYRLCQYIWG PDGMGLESAV KSNGASKKSQ KKTKKLDSVK QELSFGASPN GKAVVGDDEE  300
KDVESSLAAK KHDWFENSFL VKGIAGFGVD EHCVKQRWSL VPVETKKKVE EKLKLLQAKE  360
IEYVLQKTEV LHEVTSMIAE ASKNKLLDI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01881.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452120.1	0.0	PREDICTED: probable transcription factor At1g61730
Swissprot	Q9SYA9	1e-124	STKLD_ARATH; Probable transcription factor At1g61730
TrEMBL	M4EE67	1e-180	M4EE67_BRARP; Uncharacterized protein
STRING	Bra027078.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-83	DNA-binding storekeeper protein-related transcriptional regulator