PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01884.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 295aa    MW: 32600.2 Da    PI: 8.6478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01884.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09155202455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++ +L+ l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_01884.1_g00001.1 155 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 202
                              8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17149215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-10149206No hitNo description
PROSITE profilePS5088815.707151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-7155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MASFSSFQHY PHSLLDPLLF STPNSSVRLS GYTDQNPFDS LPDTSTIVDT SLNPFLESYS  60
VEKTESSDVK KQINTNATAA LTGDQFSQGP FTTSAGKKHR RKTKNGAKSK EGVKVRKNKK  120
PRNGSSSEKE KRASEQEPPK DYIHVRARRG QATDSHSLAE RARREKISER MRTLQNLVPG  180
CDKVTGKALM LDEIINYVQS LQNQVEFLSM KLTSISPVAY DFGSDLDGII VRPEMGSANV  240
GTSFANAMPT TTTNFSSLLD DSIIPAQAHL QEDGGEREQF VDRSGFNNNN FCSFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01884.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461128.10.0PREDICTED: transcription factor bHLH137
SwissprotQ93W881e-136BH137_ARATH; Transcription factor bHLH137
TrEMBLM4E1V30.0M4E1V3_BRARP; Uncharacterized protein
STRINGBra022753.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]