PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01908.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 323aa MW: 35605.8 Da PI: 5.2914

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01908.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.6	8.1e-29	49	142	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sess 76 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ t +e++ Rsa1.0_01908.1_g00005.1 49 RWTRQEILVLIQGKRVAESRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESRVTkEETE 134 8********************97778888888*******************************************9626666 PP trihelix 77 stcpyfdq 84 s +++ ++ Rsa1.0_01908.1_g00005.1 135 SYWVMRND 142 67777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-12	49	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.7E-5	49	114	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	49	115	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MALEQQLGLI VTAVDGDGNG EGDGVGGGEN SALSNEVGDD GVKTSRLPRW TRQEILVLIQ 60 GKRVAESRVR RGRAAGMALG SGQMEPKWAS VSSYCRRHGV NRGPVQCRKR WSNLAGDYKK 120 IKEWESRVTK EETESYWVMR NDVRRERKLP GFFDKEVYDV VDGGVVPPAL SLGLAPASTS 180 AEAEGLVSEL ERREPATKSL QDVIDKEKQA ACEAEQGGVK EKEKEKDTEA ANPEAGSTSR 240 EARKRKRTSG GEDEEEKEEE ARESMQNQLI QILERNGQLL AAQLEVQNAN LKLDREQRKD 300 HGDNLVAVLN KLADAVAKIA DKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01908.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	1e-177	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478342.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X1
Swissprot	Q8VZ20	1e-165	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1J3E8P9	1e-163	A0A1J3E8P9_NOCCA; Uncharacterized protein
TrEMBL	A0A1J3I6I5	1e-163	A0A1J3I6I5_NOCCA; Uncharacterized protein
STRING	XP_010413845.1	1e-164	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-151	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]