PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01943.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19815.5 Da    PI: 4.53
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01943.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.67.8e-091160351
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51
                             ie+   r++   +R +g++K AeEL +L d+ +++      +gk+  ++s
  Rsa1.0_01943.1_g00008.1 11 IEDRKARNIACQQRMKGLMKMAEELTTLGDTSACLTFSNrDDGKMVAWPS 60
                             89999*****************************9755424688888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.348145IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-5159IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-12272IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91158IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRPKLKLAW IEDRKARNIA CQQRMKGLMK MAEELTTLGD TSACLTFSNR DDGKMVAWPS  60
QEEAYDPESY IKTKIKEIEK RLEDTRKVVE ELEIDRLMLH IEDGGKIADL SQTELEMLKS  120
FVSKKIMYLE RKLGMQHPDT SGKEPVLGDE GLLDDNEDME TNEGDSTKSG GADDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01943.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443381.11e-125PREDICTED: uncharacterized protein LOC108815233
TrEMBLA0A397XQA75e-67A0A397XQA7_BRACM; Uncharacterized protein
STRINGBra009199.1-P2e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-33AGAMOUS-like 96