PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01945.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 585aa    MW: 66247 Da    PI: 6.4042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01945.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.52.3e-1201975711374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfs 85 
                              l++lL++cA+av+s d+++a++ L++++ ++s++gd +qRla+yf+eAL+ar+++  ++ l+ a+p+s+ts   +++ l+a+klf+
  Rsa1.0_01945.1_g00004.1 197 LRSLLTQCAQAVASFDHRRATEKLKEIRSNSSSSGDGIQRLAFYFAEALEARITGiISPPLCTAFPSSTTS---MVDILKAYKLFV 279
                              6899***************************************************8889999999999998...************ PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                              +v+Pi+   +++aN+ I+e + +++++HiiDf++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f+
  Rsa1.0_01945.1_g00004.1 280 HVCPIYVADYFAANKSIYELALNSTKLHIIDFGVLYGFQWPCLLLALSKRPGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFC 365
                              *******************************************************************9****************** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                              + ++vpfefn+ +ak++e+++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++
  Rsa1.0_01945.1_g00004.1 366 DMFNVPFEFNF-IAKKWESITLDEITINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFMT 450
                              ***********.7************************************************************************* PP

                     GRAS 256 rflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                              rf eal ++s+lfd++++++ +e+  ++r+ +Erell r++++v++ egaer++r et+++Wr r+ +aGFkp+++s ++ k ak 
  Rsa1.0_01945.1_g00004.1 451 RFKEALFHFSSLFDMFDTTIQAEDeyKNRALLERELLVRDAMSVISSEGAERFARPETYKQWRVRILRAGFKPASVSREILKGAKE 536
                              *******************99998899*********************************************************** PP

                     GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++rk + + + ++++ +++++gWk+r ++++S+W+
  Rsa1.0_01945.1_g00004.1 537 IVRKRYHKDFLIDSDGHWMLQGWKGRVIYAFSCWK 571
                              ******888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.655171551IPR005202Transcription factor GRAS
PfamPF035147.8E-118197571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDAILQVSVD GFRFENGSGS GSCCKPRNNL ETQNQSSPPT DSPSPPSICQ DNAPVLKYIN  60
DMLMDEEDFV EDNLALQAAE RSLHELLHQP SSSSSESDDH STTTTTTTLT DSGESQRKYR  120
HRNEEEDDLE NGRRNKHPAI FVSEMEELAA KLEHVLLICK SNQEDNSSAT KQSPPPTTNR  180
AKGSSKTLKQ PKAVVDLRSL LTQCAQAVAS FDHRRATEKL KEIRSNSSSS GDGIQRLAFY  240
FAEALEARIT GIISPPLCTA FPSSTTSMVD ILKAYKLFVH VCPIYVADYF AANKSIYELA  300
LNSTKLHIID FGVLYGFQWP CLLLALSKRP GGPPMLRVTG IELPQSGFRP SDRVEETGRR  360
LKRFCDMFNV PFEFNFIAKK WESITLDEIT INPGETTVVN CIHRLQYTPD ETVSLDSPRD  420
TVLKLFRDIN PDLFVFAEIN GTYNSPFFMT RFKEALFHFS SLFDMFDTTI QAEDEYKNRA  480
LLERELLVRD AMSVISSEGA ERFARPETYK QWRVRILRAG FKPASVSREI LKGAKEIVRK  540
RYHKDFLIDS DGHWMLQGWK GRVIYAFSCW KPAEKSTRDD HIIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-421975715375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01945.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456195.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A397XTQ20.0A0A397XTQ2_BRACM; Uncharacterized protein
STRINGBo9g139410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]