PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01947.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 455aa    MW: 51118.5 Da    PI: 6.3471
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01947.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42.1e-10167208341
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                              ++k+ rr+++NReAAr+sR+RKka++++Le+   + ++Le+e
  Rsa1.0_01947.1_g00008.1 167 QSKALRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEE 208
                              57999************************9833345555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-7165236IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-7166211No hitNo description
PROSITE profilePS502179.117167211IPR004827Basic-leucine zipper domain
PfamPF001708.3E-7168208IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.89E-6169212No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
PfamPF141442.7E-27254327IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQSSFKTVPF NPPDFYSQAS FFFRGDSCLD EFHQPINAFH HEEAAVGLSP SQLLSSSSSS  60
LFVLNVTVAA SNNLHYTTFD TVMDYGLRER EEECLDTGQL MYQRGGGTRL GGGEVNSSLV  120
DKWCDSVSAM ADNSQHTDTS TDIDTDDKSQ LNGVHQGMLL ATNCSDQSKA LRRLAQNREA  180
ARKSRLRKKA YVQQLENSRI RLAQLEEELK RARQQGCSVE RGASRENTHV TAGNGVFSFE  240
LEYARWMEEH QRLINDLRAG VHSQLGDNEL RVLVDAVMSH YDEIFRLKGI GTKVDVFHML  300
SGMWQTPAER FFMWLGGFRS SELLKILGNH VDPLTDQQLI GICNLQQSSQ QAEDALSQGM  360
EALQQTLLET LSSPSMGPNS SANVADYMGH MAMAMGKLGT LENFLRQADL LRQQTLQQLH  420
RILTTRQAAR AFLVIHDYIC RLRALSSLWL ARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01947.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454654.10.0PREDICTED: transcription factor PERIANTHIA isoform X1
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLM4CJE50.0M4CJE5_BRARP; Uncharacterized protein
STRINGBra004329.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]