PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01982.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 379aa MW: 42876 Da PI: 6.643

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01982.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.6e-10	95	135	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +k rr+++NReAAr+sR+RKka +++Lee +L++ ++ Rsa1.0_01982.1_g00006.1 95 DKTKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 135 7999*************************987777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-4	92	152	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-7	92	136	No hit	No description
PROSITE profile	PS50217	9.335	94	136	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-6	95	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-6	96	138	No hit	No description
PROSITE pattern	PS00036	0	99	114	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-27	185	258	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MMSSSSSTNT QAVPFRDMGM YEPFQQLSGW ENTFNTITSY NDNNNQTSST VHEVDAARTE 60 ADVNNKGNYT SLYNNNSTEA EPSSNNDQDE VQINDKTKRR LAQNREAARK SRLRKKAHVQ 120 QLEESRLKLS QLEQELVRAR QQGLCVRNPS DATTYLGPAG TMNTGIAAFE MEYKHWLEEQ 180 SKRVGEIRTA LGAHISDVEL KMLVDVCLNH YANLFRMKAD AAKADVFFLI SGMWRTSTER 240 FFQWIGGFRP SELLNVVMPY IEPLTDQQLL EVRNLQQSSQ QAEEALSQGL DKLQQGLVES 300 VAVVESVNQG AQMASAMENL QSLEGFVNQA DHLRKQSLQQ MSKILTTRQA ARGLLALGEY 360 FHRLRALSSL WAARPRERS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MMSSSSSTNT QAVPFRDMGM YEPFQQLSGW ENTFNTITSY NDNNNQTSST VHEVDAARTE  60
ADVNNKGNYT SLYNNNSTEA EPSSNNDQDE VQINDKTKRR LAQNREAARK SRLRKKAHVQ  120
QLEESRLKLS QLEQELVRAR QQGLCVRNPS DATTYLGPAG TMNTGIAAFE MEYKHWLEEQ  180
SKRVGEIRTA LGAHISDVEL KMLVDVCLNH YANLFRMKAD AAKADVFFLI SGMWRTSTER  240
FFQWIGGFRP SELLNVVMPY IEPLTDQQLL EVRNLQQSSQ QAEEALSQGL DKLQQGLVES  300
VAVVESVNQG AQMASAMENL QSLEGFVNQA DHLRKQSLQQ MSKILTTRQA ARGLLALGEY  360
FHRLRALSSL WAARPRERS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01982.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953106	0.0	EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447059.1	0.0	PREDICTED: transcription factor TGA3-like isoform X3
Swissprot	Q39234	0.0	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A078HSC1	0.0	A0A078HSC1_BRANA; BnaA08g20970D protein
STRING	Bra016389.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	0.0	TGA1A-related gene 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]