PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_01989.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 157aa MW: 17933.4 Da PI: 10.2078

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_01989.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.6	1e-20	14	62	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ Rsa1.0_01989.1_g00006.1 14 SSSSYSLAATSLQGRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 62 799*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.068	23	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.93E-12	28	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-10	28	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MRSPRPHSCS KSSSSSSYSL AATSLQGRLL TIFKKAQELT TLCDIEACVI HYGPDGELRT 60 WPENRDQVRD LAKRRKKSVN LYEFLNKMKT KNKKMTNNFK KKANRNVEEL KYPSSDHYYS 120 VDQINQLIQS LELSSSKLQS LSFGKGKLEG ASTFFEV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_01989.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479656.1	1e-71	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-36	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A397ZSC1	8e-60	A0A397ZSC1_BRACM; Uncharacterized protein
STRING	Bra025619.1-P	3e-57	(Brassica rapa)
STRING	Bo4g139560.1	2e-57	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	2e-31	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]