PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02007.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 634aa MW: 70428.5 Da PI: 6.2507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02007.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	457	494	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Rsa1.0_02007.1_g00004.1 457 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 494 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	4.8E-4	5	144	IPR029016	GAF domain-like
Pfam	PF14215	7.0E-27	7	166	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	8.55E-4	438	495	No hit	No description
PROSITE profile	PS50888	11.28	444	493	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-5	457	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-4	457	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MGSTSHEILR SLCSNTEWKY GVFWKLNHRS RIKNIWKNLM LNAALFKVLT LEDAYYDNHG 60 HNNSPKNMRN DPLGLALAKM AYHVYSLGEG IVGHVAVSGE HQWVFPEYYD NRYSASEFHN 120 VWESQISAGI KTILVVPVGP CGVVQLGSFL KVDEDVTLVN HIKHMFLLKD PLADHAANIM 180 QCNMLQPKLP SEYLHAEAFP NCSGEVGKAM DVEESSFLTQ YPNLYPYLKN HALNNTSSVE 240 TERLITDQSY PGLDSTFHTL STDKEEAERV PERRCESSRF DALISSGYNF PGSELLEALG 300 SGFKQQSRGL EELVKSEHSS ATIRPTDDNM SHSQLTFDSA PENLLDAVVA SVVCHSDGNA 360 RDDIFSSRSV QSFLTSMEPS GHNNHIVDRA MNQLPLAEVD TQQNPSDICG AFSSIGFSST 420 CPSSSSDHFQ TSLEMMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID 480 SLLERTIKHM LFLQNVTKHA DKLSKSANSK MQQKETGAQG STCAVEVGGH LQVCSIIVEN 540 LNKHGMVLIE MLCEECSHFL EISNVIKSLD LTILRGITEA QGDKTWICFV VEPKQQSDAE 600 DGHFVVFGAN ISAKGQWEAV AASSAGYLVA RLCV

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MGSTSHEILR SLCSNTEWKY GVFWKLNHRS RIKNIWKNLM LNAALFKVLT LEDAYYDNHG  60
HNNSPKNMRN DPLGLALAKM AYHVYSLGEG IVGHVAVSGE HQWVFPEYYD NRYSASEFHN  120
VWESQISAGI KTILVVPVGP CGVVQLGSFL KVDEDVTLVN HIKHMFLLKD PLADHAANIM  180
QCNMLQPKLP SEYLHAEAFP NCSGEVGKAM DVEESSFLTQ YPNLYPYLKN HALNNTSSVE  240
TERLITDQSY PGLDSTFHTL STDKEEAERV PERRCESSRF DALISSGYNF PGSELLEALG  300
SGFKQQSRGL EELVKSEHSS ATIRPTDDNM SHSQLTFDSA PENLLDAVVA SVVCHSDGNA  360
RDDIFSSRSV QSFLTSMEPS GHNNHIVDRA MNQLPLAEVD TQQNPSDICG AFSSIGFSST  420
CPSSSSDHFQ TSLEMMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID  480
SLLERTIKHM LFLQNVTKHA DKLSKSANSK MQQKETGAQG STCAVEVGGH LQVCSIIVEN  540
LNKHGMVLIE MLCEECSHFL EISNVIKSLD LTILRGITEA QGDKTWICFV VEPKQQSDAE  600
DGHFVVFGAN ISAKGQWEAV AASSAGYLVA RLCV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02007.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439028.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A0D3BT97	0.0	A0A0D3BT97_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BMG8	0.0	A0A3P6BMG8_BRAOL; Uncharacterized protein
STRING	Bo4g052580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]