PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02021.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 245aa MW: 28630.2 Da PI: 5.3031

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02021.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+lv+ v++lG ++W++ ar g++R++k+c++rw +yl Rsa1.0_02021.1_g00005.1 11 RGPWLEEEDERLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.248	6	62	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-18	9	57	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	11	58	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.64E-18	12	85	IPR009057	Homeodomain-like
CDD	cd00167	2.97E-9	13	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-6	58	84	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDYKKEGTLR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP 60 SLKRGPMSQE EETIIFQLHA FWGGQRLQGD YQVGLITRLR TIAGLILERK WKLKTMVDKI 120 IDWSRNTGGD LLCKYKETEI ITWARTTTQE HGFDKTVKES KQINMESDKE TNGGIFERES 180 FGVMKSPYEN RISDWISEIS TDQSDANLLE DRTSSSSENN IDINIGSSWF EETRDFEEFS 240 CSLWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-15	9	85	2	77	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-14	9	85	56	131	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-14	9	85	56	131	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-14	9	85	25	100	MYB TRANSFORMING PROTEIN
1mse_C	8e-15	9	85	2	77	C-Myb DNA-Binding Domain
1msf_C	8e-15	9	85	2	77	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02021.1_g00005.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189269	1e-153	AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
GenBank	AC189502	1e-153	AC189502.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490352.1	1e-149	PREDICTED: transcription factor MYB23
Swissprot	Q9SCP1	1e-103	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A397Y2H6	1e-130	A0A397Y2H6_BRACM; Uncharacterized protein
STRING	Bo8g082570.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11397	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-98	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]