PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02041.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 473aa    MW: 52775.3 Da    PI: 6.1179
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02041.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16741135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Rsa1.0_02041.1_g00003.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                             ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-11546No hitNo description
CDDcd002022.72E-17654No hitNo description
Gene3DG3DSA:3.30.50.109.4E-13740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003205.3E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139194.8E-9233333IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEDDEVEIE  60
DRRGQKKMMM INGMSMNKRI PKKKPHQENF TVKEFSNGFK KRALEEEASN NRSSSGSVVS  120
NSESCDQSNA WEACKKRTCV GPLLKAASSV EKLTKDLFSI LQEQQSSCIS GTSEEDLLFE  180
NESPMVIGHG SVLMRDLHSG GGDEESEASS LLVERSKCSS IHSQNFGGKA IKQEQLKRTK  240
SQVLGRHSLP LCNIDLKDVF NFDEFIEKFT KEEQQKLMKL LPEVDSVDLP HSLMSMFESS  300
QFKENFSLFQ QLVADGVFGT SSSSSGSKLE DSKTLAKLAL SDPKKSHLLE SYQMLKEQRK  360
EIEESVTTTS RVSNPNTSDD NSLVSIERPC ESLNQNFSET RVVMKSSKEV LKVRSKHMET  420
KEIVENSVSS FSHMSYGGSV AFSYEDNDTS DQDLLLDVPS NGSYPQAELL HMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02041.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434235.10.0PREDICTED: GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3AUX00.0A0A0D3AUX0_BRAOL; Uncharacterized protein
STRINGBo2g132210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27