PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02073.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 200aa    MW: 23349.5 Da    PI: 8.0371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02073.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.27e-19161634128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 
                              G++F+P  +el+++yL +k+egk+ ++   i+  d+y+ ePw L++ + +  +++ewy+ ++r + ++     gk+++r +t+   
  Rsa1.0_02073.1_g00004.1  16 GIQFQPYGDELINKYLIPKLEGKPRRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYLVTRTQLSQkkigCGKKAKRkITRdnd 98 
                              99**********************766...9999**********86444444889*****99877666334456677774444666 PP

                      NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkge...........ktdWvmheyrl 128
                              sg+W+a  k+    ++++ ++g k+tL+f        k  ++kg            +++W+m ey l
  Rsa1.0_02073.1_g00004.1  99 SGFWRANAKEDIPDKETNMVIGEKQTLAFVkskvnnkK--QKKGDgtscdvvvpgsESSWIMTEYML 163
                              *****999855444448888**********66665331..3333234555555555999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-216179IPR003441NAC domain
PROSITE profilePS5100524.06213181IPR003441NAC domain
PfamPF023655.8E-1416162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYGDELINKY LIPKLEGKPR REITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YLVTRTQLSQ KKIGCGKKAK RKITRDNDSG FWRANAKEDI PDKETNMVIG  120
EKQTLAFVKS KVNNKKQKKG DGTSCDVVVP GSESSWIMTE YMLPEIADKF RELVICKIHV  180
IENSDKKKDH DDRHEASTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02073.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474295.11e-144PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A0D3ECL51e-109A0A0D3ECL5_BRAOL; Uncharacterized protein
TrEMBLA0A397XK521e-109A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135840.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-13NAC domain containing protein 35