PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02089.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 353aa    MW: 38683.2 Da    PI: 6.6648
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02089.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.32e-36492012129
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++                      
  Rsa1.0_02089.1_g00003.1  49 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwnpadtirqaaankpkrykt 134
                              79**************************************************************7666665554444333322222 PP

                      TCP  66 .ssssaseceaesssssasnsssg.......................kaaksaakskksqksaasalnlakesrakarararertr 127
                                                     +                       ++   +++s+ +++s+   l+l+  ++a   a++ e+++
  Rsa1.0_02089.1_g00003.1 135 lV---------------------PppateihggsgeetehhpsvflpASIYHQPPSRADTQSQDLCLSLHSFQKAPPFADETEHET 199
                              21.....................022222333333334445556675444444455666666665666666666666666666555 PP

                      TCP 128 ek 129
                              e 
  Rsa1.0_02089.1_g00003.1 200 EH 201
                              54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-3249118IPR005333Transcription factor, TCP
PROSITE profilePS5136934.0751109IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADEEESNHH HITDSSSPPP LGMRHQSALE HGGCGEIVEV EGGHIVRSTG KKDRHSKVCT  60
AKGPRDRRVR LSAPTAIQFY DVQDRLGFDR PSKAVDWLIK KAKSAIDDLA ELPPWNPADT  120
IRQAAANKPK RYKTLVPPPA TEIHGGSGEE TEHHPSVFLP ASIYHQPPSR ADTQSQDLCL  180
SLHSFQKAPP FADETEHETE HALLSGQSNP LGFDSSTASW DQSQQNHRLV TWNNGGAADS  240
AASGGGGGFV FASPATTTTS FQPQSQFFSQ RGPLQSINTP MLRAWFDPYH HHQSVTTNDH  300
HHHHHYHPYQ SAIPGIAFAS SGDLSGLRVP ARYQSEQDDH GDKPSSDSSD SRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2056109154Putative transcription factor PCF6
5zkt_B5e-2056109154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02089.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.11e-167transcription factor TCP3
RefseqXP_006392815.11e-167transcription factor TCP3
SwissprotQ9MAH81e-139TCP3_ARATH; Transcription factor TCP3
TrEMBLV4JXC21e-166V4JXC2_EUTSA; Uncharacterized protein
STRINGXP_006392814.11e-166(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-106TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]