PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02097.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 910aa    MW: 100719 Da    PI: 6.3265
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02097.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-150.93.1e-16155775117
                     CG-1  75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                              vg+ e+l+cyYah+e++p+fqrr+yw+L+ e+e+i lvhy++v
  Rsa1.0_02097.1_g00001.1  15 VGNAEALQCYYAHGEHEPSFQRRIYWILDPEYEHIALVHYRDV 57 
                              899**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143726.686163IPR005559CG-1 DNA-binding domain
SMARTSM010760.001758IPR005559CG-1 DNA-binding domain
PfamPF038594.7E-131557IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-9373463IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.54E-16376459IPR014756Immunoglobulin E-set
CDDcd001025.17E-7376461No hitNo description
PfamPF018331.7E-9376459IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.9E-15549645IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.955551643IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-15554646IPR020683Ankyrin repeat-containing domain
CDDcd002046.45E-13556643No hitNo description
PfamPF127968.5E-8567644IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021584613IPR002110Ankyrin repeat
PROSITE profilePS5008810.766584616IPR002110Ankyrin repeat
SuperFamilySSF525401.35E-7684801IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517695717IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041696723IPR000048IQ motif, EF-hand binding site
SMARTSM000150.78749771IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.236750779IPR000048IQ motif, EF-hand binding site
PfamPF006120.011751770IPR000048IQ motif, EF-hand binding site
SMARTSM000153.1E-4772794IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993773797IPR000048IQ motif, EF-hand binding site
PfamPF006127.4E-5774794IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MQGVSDMLKA LNNLVGNAEA LQCYYAHGEH EPSFQRRIYW ILDPEYEHIA LVHYRDVSDV  60
KEVKQTGGTV LQFSLNPSTL FTSPGYSSHC IGVSSDIRHQ QHSSTSAAGN VEVNSNSNGG  120
VETRKGSGRS SYEREALKRL EEQLSLGDDD DNVVQNESLD SLQFLDIEHL VPPAIVHQRP  180
ETSSKLGRCY GGSVGPQYNT VGPLYYHKES LESLLSSECS EDTNHLAQPA AGHQRPESNR  240
LERCLGGHIG ADYHSNNLML VKNDSDGSGG SGDQKPKYWK DVLEACDSSI ALTSEGSTPS  300
SAKGLLAGMQ EDSNWSYSNQ ADQATLLLPQ ELGSCFELPT CYSELRAREN NADNSRMKQP  360
FEQVMSQTVA YKQKFTIQDI SPEWGYANET TKVIIVGSFL CDPKQSTWSC MFGSTEAPFE  420
IIKEGVLRCQ APPCGPGKVN LCITSGDGLS CSQTKEFEYH DKPDTSSFPK CSRDELLLLV  480
RLVQTLVSDS KSNLEPWSHI LETVLDGTAT SSSTVDWLLR ELLKDKLDAW LSSRTRQDEE  540
DQPSCCSLSK QEQGIIHMVS GLGFEWALHI ILACGVSVDF RDINGWSALH WAARFGSEKM  600
VAALIASGAS AGAVTDPTAQ DPAGKTAASI AASNGHKGLA GYLSEVALTN HLSSLTLEET  660
EKSKETAQLQ AEMTLNSISK RSPYSLKDTL AAVRNAAQAA ARIQAAFRAH SFRKRQQREA  720
AAYFREYGIY ADIKGISAMS KLAFGNVKNY HSAALSIQKN YRRYKRRKEF LSLRKKVVKI  780
QAHVRGYQIR KHYKVICWAV GILDKVVLRW RRKGAGLRGF RQDVEDSEEE EDILKVFRKQ  840
KVDVAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTESLGAGG DEDDDLFDLA  900
DMEDDSLFAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1761768RRYKRRKE
2762775RYKRRKEFLSLRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02097.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445566.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLM4CJ330.0M4CJ33_BRARP; Uncharacterized protein
STRINGBra004217.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]