PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02147.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 257aa MW: 28957.6 Da PI: 5.0079

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02147.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	81.2	1.6e-25	35	126	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d++++ ++s s+n+nsf+v+d+ +fa+ +LpkyF h+n++SF+R+Ln+YgF kv+ ++ w F+++ k Rsa1.0_02147.1_g00006.1 35 FLSKTYDMVDDPSTDPIVSGSANSNSFIVWDPPQFAQVLLPKYFNHNNLSSFIRKLNTYGFWKVDPDR---------WDFANEVGK 111 9****************************************************************999.........999999999 PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 g +e++e++kr k+ Rsa1.0_02147.1_g00006.1 112 FGLEEEVERLKRDKN 126 999999999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.2E-28	30	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.9E-39	31	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.35E-24	33	108	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.7E-21	35	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-16	35	58	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-16	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.1E-16	86	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDGGKSGGGS VTMESTEIPQ PQPVAVLSGN VAPPFLSKTY DMVDDPSTDP IVSGSANSNS 60 FIVWDPPQFA QVLLPKYFNH NNLSSFIRKL NTYGFWKVDP DRWDFANEVG KFGLEEEVER 120 LKRDKNVLMQ ELVRLRQPQQ FTDNNLQTIV QRLQGMENRQ QQRINDTSKK RRFKQDGIVT 180 RKDSDGQLVK YQPPMHEQAK AMLKQLMKME PYKTGDDGFL LGDGSSTTTE GTEMEISSNN 240 VSGMILQEMP TASDIQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-19	32	123	17	119	Heat shock factor protein 1
5d5u_B	4e-19	23	123	18	128	Heat shock factor protein 1
5d5v_B	4e-19	23	123	18	128	Heat shock factor protein 1
5d5v_D	4e-19	23	123	18	128	Heat shock factor protein 1
5hdg_A	4e-19	32	123	7	109	Heat shock factor protein 1
5hdn_A	4e-19	32	123	7	109	Heat shock factor protein 1
5hdn_B	4e-19	32	123	7	109	Heat shock factor protein 1
5hdn_C	4e-19	32	123	7	109	Heat shock factor protein 1
5hdn_D	4e-19	32	123	7	109	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	8	GGKSGGG
2	168	173	KKRRFK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02147.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC084110	7e-62	AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBank	CP002684	7e-62	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	7e-62	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586097.1	1e-127	PREDICTED: heat stress transcription factor A-1d
Swissprot	Q9LQM7	1e-127	HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBL	A0A0D3CDP8	1e-126	A0A0D3CDP8_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6TL04	1e-126	A0A3N6TL04_BRACR; Uncharacterized protein
STRING	Bostr.3359s0126.1.p	1e-126	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6470	24	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-110	heat shock transcription factor A1D

Publications ? help Back to Top
Higashi Y, et al. HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression. Mol Plant, 2013. 6(2): p. 411-22 [PMID:23393165] Jung HS, et al. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9 [PMID:23918368] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohama N, et al. The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression. Plant Cell, 2016. 28(1): p. 181-201 [PMID:26715648]