PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02151.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

YABBY

Protein Properties

Length: 260aa MW: 29740.1 Da PI: 10.5897

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02151.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	76.3	9.6e-24	5	62	4	61
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + Rsa1.0_02151.1_g00001.1 5 ATAAEQLCYIPCNFCNIVLAVSVPGSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPN 62 5689*******************************************99998887554 PP
2	YABBY	99.9	5.5e-31	85	142	102	159
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s+ + + ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn Rsa1.0_02151.1_g00001.1 85 SRISARTISEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142 5556777888888********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-58	7	142	IPR006780	YABBY protein
SuperFamily	SSF47095	5.31E-6	97	141	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSNSATAAEQ LCYIPCNFCN IVLAVSVPGS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR 60 PNFQATPYAT PEYGSSSRGH TKISSRISAR TISEQRVVNR PPEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNVREEDRDH LFLRCPVSRA LWTLVLRRLG YSFRAFNTWT 180 AFADWTGSKD TVTSRTLKRM VAQATLYNIW IERNARLHSR ESRTPAVLCK IIDRSIKDAI 240 LGRRKLKEFE PLIQLWLRHE

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02151.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353291	1e-154	AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466116.1	1e-100	PREDICTED: axial regulator YABBY 5
Refseq	XP_018466117.1	1e-100	PREDICTED: axial regulator YABBY 5
Refseq	XP_018466118.1	1e-100	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	7e-91	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A3N6R399	9e-96	A0A3N6R399_BRACR; Uncharacterized protein
STRING	Bo3g041840.1	5e-96	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-93	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]