PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02166.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 275aa    MW: 31560.3 Da    PI: 10.2518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02166.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-1254951655
                      AP2 16 vAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                             +AeIr+p++ +g  +kr +lg+f+ta eAa a+++a+ +++g
  Rsa1.0_02166.1_g00002.1 54 RAEIREPVNqRGgNSKRLWLGTFDTAAEAALAYDRAASAMYG 95
                             69****888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.36941103IPR001471AP2/ERF domain
SMARTSM003807.4E-1448109IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1354105IPR016177DNA-binding domain
CDDcd000188.98E-1954104No hitNo description
Gene3DG3DSA:3.30.730.101.2E-1755104IPR001471AP2/ERF domain
PfamPF008471.6E-66295IPR001471AP2/ERF domain
PfamPF045254.0E-26155268IPR007612LURP1-related protein domain
SuperFamilySSF545187.85E-21161273IPR025659Tubby C-terminal-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEKEDNVSNQ SSSASVEPSR RRRRRRVAEP VDTTLSKWVK EEEGLKKVRR VQARAEIREP  60
VNQRGGNSKR LWLGTFDTAA EAALAYDRAA SAMYGRYARL NFPDRLGNCP GGEMNDEPGS  120
SRSYWLETSN YCKLNKTLRF GMVKAIQMVQ IKQIKQNQIY KLSLGDCWMV YDGETQRDPI  180
FMAKKNVGIM TNMRSLVSVS SKNVLYEIEG SYSQRSCKIL DERRNKKKTV EIKRKEAMVG  240
GVAFGKDVFK LIVEPEMEPR VAMALTIILD QMFRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02166.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891921e-102AC189192.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002P20, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.16e-19ERF family protein