PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02180.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 446aa    MW: 47168.6 Da    PI: 8.078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02180.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-124873227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C +++rtG C yG+rC+F+H++
  Rsa1.0_02180.1_g00003.1 48 DEADCIYYLRTGACGYGSRCRFNHPR 73
                             6799********************96 PP
2zf-CCCH30.37.4e-1099118827
                              GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                              +f+rtGtCk+G++Ck++H++
  Rsa1.0_02180.1_g00003.1  99 HFMRTGTCKFGATCKYHHPR 118
                              8*****************96 PP
3zf-CCCH37.63.7e-12139163226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG+Ck+G +C+F+H+
  Rsa1.0_02180.1_g00003.1 139 GEKECSYYLRTGQCKFGLTCRFNHP 163
                              7899********************9 PP
4zf-CCCH406.7e-13290314226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++f+rtG Ck+G++C+++H+
  Rsa1.0_02180.1_g00003.1 290 DQPECQYFMRTGDCKFGSSCRYHHP 314
                              689*********************9 PP
5zf-CCCH32.71.3e-10336361227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              + + C +fa+ G+Ck+G+ CkF H++
  Rsa1.0_02180.1_g00003.1 336 GVAQCTHFAQHGICKFGPACKFDHSM 361
                              6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9864674IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-104873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003560.3895118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6998119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-799118IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54137165IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9139163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6139166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4143162IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155288316IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10290314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6291317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5294314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723334362IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4334361IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8336360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5337362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4340361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MERYGRSGEE GSRSDPSLEW TTTTHGGQTG VQASMWRGGV ESYPERPDEA DCIYYLRTGA  60
CGYGSRCRFN HPRDRGAVIG GGVRGGGDGA LPERMGQPHF MRTGTCKFGA TCKYHHPRQG  120
GGSVAPVTLS YLGYPLRPGE KECSYYLRTG QCKFGLTCRF NHPVPQQQQQ QPQPQPQLHT  180
IYPTLQSQPS QQYGLVLARP SLLPGSYLPS PYGPPMVLPP GMVTYPGWSP YQASLTAMPS  240
PGTQPSIGPS SVYGMAPLSP SGTAYTGGTY QPGGTSLTTS KEESFPQRPD QPECQYFMRT  300
GDCKFGSSCR YHHPLDAVQP KTGVLFSSIG LPLRPGVAQC THFAQHGICK FGPACKFDHS  360
MSSSLSYSPS ASSLTDMPVA PYPIGSSSLS GASAPVSSSD VPTTTQAVAA AASAPMVSGL  420
SSQEPAETSG DSASVSGSVE AKTSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02180.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129667.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A3P5YZB70.0A0A3P5YZB7_BRACM; Uncharacterized protein
STRINGBra020750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]