PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02224.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 431aa MW: 48708.7 Da PI: 9.5367

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02224.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.5	2.4e-23	83	127	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ Rsa1.0_02224.1_g00004.1 83 DPEPTRCRRTDGKKWRCSNKVLLLQKYCERHMHRGRKRSRKLVES 127 79***************************************9986 PP
2	WRC	69.4	4.4e-22	307	350	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +epgrCrRtDGKkWRCs++vl+g+k+C++H+hrg+ ++++++e+ Rsa1.0_02224.1_g00004.1 307 NEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGSVKKKHPVET 350 79********************************9999999886 PP
3	QLQ	44.5	4.8e-16	20	54	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 + aaQlq++++Q+l+y+y+ a++ vP++L+++i++ Rsa1.0_02224.1_g00004.1 20 MKAAQLQEFRMQALVYRYIEAGLRVPHHLVVPIWN 54 679*******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-7	18	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	16.403	19	54	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.7E-10	22	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.289	83	127	IPR014977	WRC domain
Pfam	PF08879	1.7E-19	84	126	IPR014977	WRC domain
PROSITE profile	PS51667	21.949	306	351	IPR014977	WRC domain
Pfam	PF08879	3.9E-18	308	348	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MQSPKTEEEE ERGRKKWPCM KAAQLQEFRM QALVYRYIEA GLRVPHHLVV PIWNSLALSS 60 SSTSSYLIHY NHHSSSLLND KVDPEPTRCR RTDGKKWRCS NKVLLLQKYC ERHMHRGRKR 120 SRKLVESSPS SYDVASSSVS TKRDNTDGLA SSSKSQSETM SVSSNAQVVT IASLPTARVC 180 DNVTRPSLVI TESTNRRASN LDRSRRVMDM SYDDFIKQRG ATTCVRGFPV QGPERLPSVQ 240 KFFPEASDTS LEAARFSSNR KNEIIARSRE WKNMNVNGSL FPNIHFSPDT VLQDRGGFGL 300 HRVETENEPG RCRRTDGKKW RCSKDVLSGQ KYCDKHMHRG SVKKKHPVET THTHENASFI 360 RVTVRPDDRS VPCKDDGDGQ KLPVSVLGRE QLSQVSDEKN TNSCSTDTTV TDIALRCEDN 420 EEVLSLCSSG V

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MQSPKTEEEE ERGRKKWPCM KAAQLQEFRM QALVYRYIEA GLRVPHHLVV PIWNSLALSS  60
SSTSSYLIHY NHHSSSLLND KVDPEPTRCR RTDGKKWRCS NKVLLLQKYC ERHMHRGRKR  120
SRKLVESSPS SYDVASSSVS TKRDNTDGLA SSSKSQSETM SVSSNAQVVT IASLPTARVC  180
DNVTRPSLVI TESTNRRASN LDRSRRVMDM SYDDFIKQRG ATTCVRGFPV QGPERLPSVQ  240
KFFPEASDTS LEAARFSSNR KNEIIARSRE WKNMNVNGSL FPNIHFSPDT VLQDRGGFGL  300
HRVETENEPG RCRRTDGKKW RCSKDVLSGQ KYCDKHMHRG SVKKKHPVET THTHENASFI  360
RVTVRPDDRS VPCKDDGDGQ KLPVSVLGRE QLSQVSDEKN TNSCSTDTTV TDIALRCEDN  420
EEVLSLCSSG V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	123	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02224.1_g00004.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478603.1	0.0	PREDICTED: growth-regulating factor 9 isoform X1
Swissprot	Q8S9M3	1e-177	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	A0A0D3C6E5	0.0	A0A0D3C6E5_BRAOL; Uncharacterized protein
STRING	Bo4g195580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-176	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]